NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31059.1 Public Homo sapiens 1 COA6 24 110 108 CCDS HistoryNCBI Gene:388753Re-query CCDS DB by CCDS ID:31059.1Re-query CCDS DB by GeneID:388753See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366613.1 ENSP00000355572.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366613.1Link to Ensembl Protein Viewer:ENSP00000355572.1Re-query CCDS DB by Nucleotide ID:ENST00000366613Re-query CCDS DB by Protein ID:ENSP00000355572
Original member Current member NCBI NM_001012985.2 NP_001013003.1 Accepted alive Link to Nucleotide Sequence:NM_001012985.2Link to Protein Sequence:NP_001013003.1Re-query CCDS DB by Nucleotide ID:NM_001012985Re-query CCDS DB by Protein ID:NP_001013003Link to BLAST:NP_001013003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013003.1 125 Q5JTJ3-1 125 100% 0 0

Chromosomal Locations for CCDS 31059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 234373719 234373840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234374230 234374389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234383723 234383818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGGCCCGGGAGGTCCCTTACTGTCCCCGAGCCGCGGGTTCCTCTTGTGCAAAACGGGGTGGCACTCCA
AT
CGCCTGCTTGGTGATTGTGGCCCCCACACACCTGTTTCTACAGCGCTTAGCTTCATCGCAGTAGGAAT
G
GCAGCCCCATCTATGAAGGAAAGACAGGTCTGCTGGGGGGCCCGGGATGAGTACTGGAAGTGTTTAGAT
GAG
AACTTAGAGGATGCTTCTCAATGCAAGAAGTTAAGAAGCTCTTTCGAATCAAGTTGTCCCCAACAGT
GG
ATAAAATATTTTGATAAAAGAAGAGACTACTTAAAATTCAAAGAAAAATTTGAAGCAGGACAATTTGA
G
CCTTCAGAAACAACTGCAAAATCCTAG


Translation (125 aa):
MGPGGPLLSPSRGFLLCKTGWHSNRLLGDCGPHTPVSTALSFIAVGMAAPSMKERQVCWGARDEYWKCLD
E
NLEDASQCKKLRSSFESSCPQQW
IKYFDKRRDYLKFKEKFEAGQFEPSETTAKS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser