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Report for CCDS30465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30465.1 Public Mus musculus X Tro 23 108 98 CCDS HistoryNCBI Gene:56191Re-query CCDS DB by CCDS ID:30465.1Re-query CCDS DB by GeneID:56191See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087258.9 ENSMUSP00000084513.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087258.9Link to Ensembl Protein Viewer:ENSMUSP00000084513.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087258Re-query CCDS DB by Protein ID:ENSMUSP00000084513
Original member Current member EBI ENSMUST00000112709.7 ENSMUSP00000108329.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112709.7Link to Ensembl Protein Viewer:ENSMUSP00000108329.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112709Re-query CCDS DB by Protein ID:ENSMUSP00000108329
Original member Current member NCBI NM_001002272.3 NP_001002272.1 Accepted alive Link to Nucleotide Sequence:NM_001002272.3Link to Protein Sequence:NP_001002272.1Re-query CCDS DB by Nucleotide ID:NM_001002272Re-query CCDS DB by Protein ID:NP_001002272Link to BLAST:NP_001002272.1
Original member Current member NCBI NM_001290770.1 NP_001277699.1 Accepted alive Link to Nucleotide Sequence:NM_001290770.1Link to Protein Sequence:NP_001277699.1Re-query CCDS DB by Nucleotide ID:NM_001290770Re-query CCDS DB by Protein ID:NP_001277699Link to BLAST:NP_001277699.1

Chromosomal Locations for CCDS 30465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150645705 150649655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150650434 150650548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150650977 150651039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150651416 150651458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150651553 150651632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150652284 150652375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150652841 150652920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150653120 150653183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150653292 150653396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150653989 150655614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150655884 150655928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6264 nt):
ATGGATAGAAGAAATGACCATGGTCATCGGGTGCCCACATTCCAGGGCCCTCTGCCTCCCGCTGGGAGCC
TAGGGCTTCCTTTCTCTCCAGATGTACAGTCGGAGACCACAGAAAAGGACCCACCAATTGCCAGCCGATC
TAAGAAAAACAAGAACAAGAAGAATTCTATTAAGCCTATGGATAAGACCACACCGGCTCCCCCTCCAGTC
CCATCTGCCAATGATAATGCTAGCAACAAGCCTAAAGTAACTTTGCAGGCTTTAAACCTACCAATGTTCA
CCCAGATCAGTCAGGCTTCAGCTACTACTGAGGCACCCAATATCCAGGCTTCAGTTACTTCTCAGACCCA
GAAAGCCAAGACAATGAGAGTTACTCCCAAGGTATCCCTAACTGGCAGTGAGGATGCCACTACACAGCTG
AAGCCACCATTACAGGCCCTAAACCTACCAGTTACCACACCGACTATCCAGACTCCAGTTGCCAATGAGT
CAGCTAATTCCCTGGCCTCAACAGCTGTCAACAAATCCAAGAAAGCTTCTACGGCAAACAATGCTGCCAA
TAAGACTGTACCTAGTGCTGCTGAGATCTCATTGGCTTCGGCTGCTACCCACACAGTTACTACCCAAGGC
CAAGCTGCCAAGGAGACAGGTAGTATCCAGACTATAGCAGCCACTGCCCGAAGCAAGAAAAATTCCAAAG
GAAAAAGAACACCTGCTAAGACCACAAATACTGACAATGAATATGTAGAGGCCTCAAATGCCATTGAGGC
ATCTAGCAGACAGATTGGGGCATCTGGCAGACAGACTGAGGCATCTAACAGACAGATTGAGGCATCTAGC
AGACAGACTGAGGCATCTAACAGACAGACTGAGGCATCTAGCAGACAGACTGAAGCATCTAGCAGACAGA
CTGAAACATCTAACAGACAGATTGGGGCATCTAACAGACAGATCATGGCATCTAACAGACAGATTGGGGC
ATCTAACAGACAGATTGAGGCATCTAACAGACAGATTGGGGCATCTAACAGACAGACAGAGGTATCTAGC
AGACAGATTGAGGCATCTAACAGACAGATTGGGGCATCTAACAGACAAACTGAGGCATCTAACAGACAGA
TTGGGGCATCTAACAGACAGACTGAGGCATCTAACAGACAGATTGGGGCATCTAACAGACAGACTGATGC
ATCTAACAGACAGACTGATGCATCTAACAGACAGACTGAGGCATCTAGCAGACAGACAGAGGCATCTAGC
AGACAGACAGAGGCATCTAGCAGACAGACTGAGGCATCTAGCAGACAAATTGAGGCATCAGCTGCAGCTG
TGAGGCCCAAAAAGCCCAGGGGGAAGAAGGGTAACAATAAAGGCTCAAATTCTGCTTCTGAGCCCTCTGA
GGCTCCACCTGCCATTCAAACGGTTACAAACCATGCCCTATCTGTCACTGTACGGATCAGGAGAGGGTCT
AGGGCTCGAAAGGCTGCCAATAAGAATCGGGCAACTGAAAGCCAAGCTCAGATCGCTGAACAAGGAGCTC
AGGCCTCTGAGGCCAGCATAAGTGCCCTGGAGACTCAGGTTGCTGCTGCTGTCCAGGCCTTGGCAGATGA
CTATCTGGCTCAGTTGAGTTTAGAACCCACGACCAGAACCCGGGGCAAGAGGAACCGAAAGTCTAAGCAT
CCCAATGGAGAAGAAAGAACTGGAAATAATTACAGGCGGATCCCATGGGGCAGGCGGCTTCCACCACCCC
GAGATGTGGCCATTTTGCAGGAAAGGGCAAATAAGTTGGTGAAATATCTGTTGGTTAAAGACCAGACAAA
GATCCCAATCAAGCGCTCAGATATGCTGAAGGATGTCATCCAAGAATATGAGGACTATTTCCCAGAGATC
ATTGAACGAGCAAGCTACGCTCTGGAGAAGATGTTTCGAGTCAATCTGAAGGAAATTGATAAGCAAAATA
ACTTGTATATTCTTATCAGCACTCAGGAGTCATCTGCAGGCATAATGGGAACGACCAAGGACACACCTAA
GCTGGGTCTCCTCATGGTGATTCTGAGTGTCATTTTCATGAATGGCAACAAGGCCAGTGAGGCTGTCATC
TGGGAGGTGCTGCGCAAGTTGGGACTGCACCCTGGGGTAAAACATTCACTCTTTGGAGAAGTGAAGAAAC
TCATCACAGATGAATTTGTGAAGCAGAAATATCTGGAATACAAGAGGGTCCCCAACAGCAGACCACCTGA
GTATGAATTCTTCTGGGGCCTACGGTCTTACCATGAGACTAGCAAGATGAAAGTCCTGAAATTTGCATGC
AAGGTACAGAAGAAAGATCCCAAAGACTGGGCTGCTCAGTACCGCGAGGCAGTTGAGATGGACATTCAGG
CTGCAGCTGTGGCTGTGGCTGAGGCTAAGGCCAGGGCTGAGGCAAGAGCCCAAATGGGGATTGGAGAGGA
AGCTGTGGCTGGTCCCTGGAATTGGGATGACATGGATATTAACTGCCTAACAAGGGAAGAGTTGGGTGAT
GATGCGCAGGCCTGGAGCAGATTTTCCTTTGAAATTGAACCCAGAGCCCAAGAAAATGCAGATCCTACCA
CTAATGTCCTCTTCAACCAAGGAGCTACTACCAGAAATAGCTTTAGTGATGGTGCTGGTATTAGCTTTGG
TGGTATAACCAACCCCAGTGGTGGCTTTGGTGGCATATCCAACCCCAGTGGTGGCTTTGGTGGCATATCC
AACCCCAGTGGTGGCTTTGGTGGCATATCCAACCCCAGTGGTGGCTTTGGTGGCATATCCAACCCCAGTG
GTGGCTTTGGTGGCATATCCAACCCCAGTGGTGGCTTTGGTGGCATATCCAACCCCAGTGGTGGCTTTGG
TGGCATATCCAACCCCAGTGGTGGCTTTGGTGGCATATCCAATCCCAGTGGTGGCTTTGGTGGCATATCC
AACCCCAGTGGTGGCTTTGGTGGCATATCCAATCCCAGTGGTGGCTTTGGTGGCATATCCAACCCCAGTG
GTGGCTTTGGTGGCATATCCAATCCCAGTGGTGGCTTTGGTGGCATATCCAATCCCAGTGGTGGCTTTGG
GGGCAGAAATAGCATTACTTTTGGGAGTGTACCCAACACCTCTGCCAACTTCAGCAGTGCACCGAGCATT
AGCTTTGGTGACACACCTAACACTAGCACCAGTTTCAGTGGCGGAGCCAACAGTAGCTTCAGTGGCACAC
CTAGTACTAGTGCCCCTTTCTGTAACACAGCAAGCATTAGCTTTGGTGGTGCACCCAGCACTAGCACCAG
CTTTAGCACAGCGAGCATTAGCTTTGGTGGTGCACCCAGCACTAGCACCAGCTTAAGCACAGCAAGCATT
AGCTTTGGTGGTGCACCTAGCACTAGCACCAGCTTCAGCACAGCGAGCATTAGCTTTGGTGGTGCACCCA
GCACTAGCACCAGCTTAAGCACAGCAAGCATTAGCTTTGGTGGTGCACCCAGCATTAATAGTAGTAGTGG
TGGATCCAGCGTTAGCTTTGGTGGTGCTCCTACCACCAGTACCAGTTTCAGTGGTGGACCCTGTATTAGT
TTTGGTGGTGCACCTTGTACCACTGCCAGTATTAGTGGTGGAGCCAGCTCTGGCTTTGGAAGCACGCTTT
GCAGTACCAACCCTGGCTTTAGTGCACTCAGCACAAACACCAGCTTCGGCAGTGCACCAACTACAAGCAC
TGTGTTCAGTGGTGCAGTTAGTACCACCACTGGCTTTGGAGGCACACTTAGCACCAGTGTCTGCTTTGGT
AGTTCTCCCTACTCTGGCGCTGGCTTTGGAGGCACACTTAGTACCAGTATCTCCTTTGGTGGTTCTCCTA
GCACCAATACTGGTTTTGGTGGTACACTCAGCACCAGTGTTTCCTTCGGTGCTTCTTCTAGCACCAGCTC
TGACTTTGGTGGCACACTAAGCACTAGTGTCAGCTTTGGTGGCTCTTCTGGTGCCAATGCTGGCTTTGGC
GGTACACTCAACAGCAGTACCAGCTTTGGCGGTGCCATCAGCACCAGCACTGGCTTTGGCAGTGCACTCA
ATAACAGTGCCAACTTTGGTGGTGCCATAAGTACCAGCTTTAGTGGTGTACTCAATAGCAGTGCCAGCTT
TGGTGGTGCCATCAACACCAGTGCTGGCTTCGGCAGTACACTCAACAGCAGTGCCAGCTTTGGCAGTGCA
CTCAGCACCAGTGCCAGCTTTGGTGGTGTACTCAATGGCAGTGCTGGCTTTGGTGGTGCCTTGAACACCA
ATGCCACCTTTGGTGGTGTACTCAATGGCAGTGCTGGCTTTGGTGGTGCCATGAACACCAATGCCACCTT
TGGTGGTGCACTGAATAGTAATGCCGGCTTTGGCGGTGCCATCAGTACGAGTACCAACTTCGGTGGTGCA
CTGAATAACAGTGCTGGCTTTGGCGGTGCCATGAACACTAGTGCCAGCTTTGGTGGTGCACTGAATAACA
GTGCTGGCTTTGGCGGTGCCATCAGTACGAATGCCACCTTTGGTGGTGCACTGAATAACAGTGCTGGCTT
TGGTGGTGCCATCAGTACGAATGCCACCTTTGGTGGTGCACTGAATAACAGTGCTGGCTTTGGTGGTGCC
ATCAGTACGAGTGCCAGCTTCGGTGGTACACTGAATAACAGTGCTAGCTTTGGCGGTGCCATCAACACTA
GTGCCAGCTTCGGTGGTGTACTGAATAACAGTGCTGGCTTTGGCGGTGCCATCAACACCAGTGCCAACTT
TGGTGGCGCACTGACTAACAGTGCTGGCTTTGGCGGTGCCATCAGTACGAGTGCCAGCTTTGGTGGTGCA
CTGAATAACAGTGCTGGCTTTGGTGGTGCCATCAGTACGAGTGCCAGCTTTGGTGGTGCACTGAATAACA
GTGCTGGCTTTGGCGGTGCCATCAGCACCAATGCCAGCTTTGGTGGAGCAATCAGCAACAGTCCTGACTT
TGGTGGTGCATTCAGTACCAGTGTTGGCTTTGGTGGCACACTTAATACCACTGACTTTGGTAGTACCCAT
AGCAACAGCATTAGCTTTGGCAGTGCTCCCACTACCAGCGTTAGCTTTGGTGGGTCTCATAGCACTAACC
TCTGTTTCGGTGGAGCACCCAGCACCAGTCTCTGTTTTGGCAGTGCATCTAACACCAACCTATGCTTTGG
AGGCTCTAACAGCACCAACTGCTTTAGTGGTGCTACCAGTGCCAATTTCAATGAGGGGCACAGCATCAGT
TTTGGGAATGGGCTAAGTACCAGTGCTGGATTTGGAAATGGGCTGGGCACCAGTGCTGGCTTTGGCAGCA
GCCTTGGTACCAGCACTGGCTTTGGTGGAAGCTTAGGCCCCAGTGCTAGCTTCAATGGTGGCCTGGGCAC
CAGCACTGGCTTTGGCGGTGGACTAGGCACCAGCACGGATTTCAGTGGTGGACTAAATCATAATGCTGAC
TTCAATGGAGGACTGGGTAACAGTGCTGGCTTCAATGGTGGACTAAACACTAACACTGATTTTGGTGGTG
AACTGGGCACTAGCGCTGGCTTTGGTGATGGACTGGGCAGCAGCACCAGCTTTGGTGCAGGACTGGTCAC
TAGTGATGGCTTTGCTGGTAACCTGGGCACCAATACTGGTTTTGGTGGCACACTTGGCACTGGTGCAGGC
TTTAGTGTAAGCCTCAACAATGGCAATGGCTTTGGCAATGGGCCTAATGCCAGCTTCAACAGAGGACTGA
ATACCATCATTGGCTTTGGCAGTGGTTCCAACACCAGCAATGGCTTTACTGGTGAACCCAACACTGGCTC
CAGCTTCAGTAATGGACCCAGTTCTATTGTTGGCTTTAGTGGTGGACCAAGCACTGGTGCTGGCTTCTGC
AGTGGACCAAGCACTGGTGGCTTCGGTGGTGGACCAAGTACAGGACCTGGCTTCGGTGGACCAAGTACAG
GACCTGGCTTCGGTGGACCAAGCACTGGAGGTGGCTTTGGAGGACCAAATACTGGAGGTGGCTTTGGAGG
ACCAAGCACTGGAGGTGGCTTTGGAGGACCAAGCACTGGAGGTGGCTTCGGAGGACCAAGCACTGGAGGT
GGCTTCGGAGGACCAAGCACTGCAGCTGGCTTTGGTAGTGGACTGAGCACCAGCACTGGCTTTGGTGGTG
GACTGAATACCAGTGCTGGATTCAGTGGTGGACCGCCAAGCACCGGTACTGGCTTTGGTGGTGGAGCCTC
TAGCCATGGTGGCTGTGGCTTCCCTTACGGCTAG

Translation (2087 aa):
MDRRNDHGHRVPTFQGPLPPAGSLGLPFSPDVQSETTEKDPPIASRSKKNKNKKNSIKPMDKTTPAPPPV
PSANDNASNKPKVTLQALNLPMFTQISQASATTEAPNIQASVTSQTQKAKTMRVTPKVSLTGSEDATTQL
KPPLQALNLPVTTPTIQTPVANESANSLASTAVNKSKKASTANNAANKTVPSAAEISLASAATHTVTTQG
QAAKETGSIQTIAATARSKKNSKGKRTPAKTTNTDNEYVEASNAIEASSRQIGASGRQTEASNRQIEASS
RQTEASNRQTEASSRQTEASSRQTETSNRQIGASNRQIMASNRQIGASNRQIEASNRQIGASNRQTEVSS
RQIEASNRQIGASNRQTEASNRQIGASNRQTEASNRQIGASNRQTDASNRQTDASNRQTEASSRQTEASS
RQTEASSRQTEASSRQIEASAAAVRPKKPRGKKGNNKGSNSASEPSEAPPAIQTVTNHALSVTVRIRRGS
RARKAANKNRATESQAQIAEQGAQASEASISALETQVAAAVQALADDYLAQLSLEPTTRTRGKRNRKSKH
PNGEERTGNNYRRIPWGRRLPPPRDVAILQERANKLVKYLLVKDQTKIPIKRSDMLKDVIQEYEDYFPEI
IERASYALEKMFRVNLKEIDKQNNLYILISTQESSAGIMGTTKDTPKLGLLMVILSVIFMNGNKASEAVI
WEVLRKLGLHPGVKHSLFGEVKKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFAC
KVQKKDPKDWAAQYREAVEMDIQAAAVAVAEAKARAEARAQMGIGEEAVAGPWNWDDMDINCLTREELGD
DAQAWSRFSFEIEPRAQENADPTTNVLFNQGATTRNSFSDGAGISFGGITNPSGGFGGISNPSGGFGGIS
NPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGIS
NPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGISNPSGGFGGRNSITFGSVPNTSANFSSAPSI
SFGDTPNTSTSFSGGANSSFSGTPSTSAPFCNTASISFGGAPSTSTSFSTASISFGGAPSTSTSLSTASI
SFGGAPSTSTSFSTASISFGGAPSTSTSLSTASISFGGAPSINSSSGGSSVSFGGAPTTSTSFSGGPCIS
FGGAPCTTASISGGASSGFGSTLCSTNPGFSALSTNTSFGSAPTTSTVFSGAVSTTTGFGGTLSTSVCFG
SSPYSGAGFGGTLSTSISFGGSPSTNTGFGGTLSTSVSFGASSSTSSDFGGTLSTSVSFGGSSGANAGFG
GTLNSSTSFGGAISTSTGFGSALNNSANFGGAISTSFSGVLNSSASFGGAINTSAGFGSTLNSSASFGSA
LSTSASFGGVLNGSAGFGGALNTNATFGGVLNGSAGFGGAMNTNATFGGALNSNAGFGGAISTSTNFGGA
LNNSAGFGGAMNTSASFGGALNNSAGFGGAISTNATFGGALNNSAGFGGAISTNATFGGALNNSAGFGGA
ISTSASFGGTLNNSASFGGAINTSASFGGVLNNSAGFGGAINTSANFGGALTNSAGFGGAISTSASFGGA
LNNSAGFGGAISTSASFGGALNNSAGFGGAISTNASFGGAISNSPDFGGAFSTSVGFGGTLNTTDFGSTH
SNSISFGSAPTTSVSFGGSHSTNLCFGGAPSTSLCFGSASNTNLCFGGSNSTNCFSGATSANFNEGHSIS
FGNGLSTSAGFGNGLGTSAGFGSSLGTSTGFGGSLGPSASFNGGLGTSTGFGGGLGTSTDFSGGLNHNAD
FNGGLGNSAGFNGGLNTNTDFGGELGTSAGFGDGLGSSTSFGAGLVTSDGFAGNLGTNTGFGGTLGTGAG
FSVSLNNGNGFGNGPNASFNRGLNTIIGFGSGSNTSNGFTGEPNTGSSFSNGPSSIVGFSGGPSTGAGFC
SGPSTGGFGGGPSTGPGFGGPSTGPGFGGPSTGGGFGGPNTGGGFGGPSTGGGFGGPSTGGGFGGPSTGG
GFGGPSTAAGFGSGLSTSTGFGGGLNTSAGFSGGPPSTGTGFGGGASSHGGCGFPYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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