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Report for CCDS30389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30389.1 Public Mus musculus X Cstf2 23 108 98 CCDS HistoryNCBI Gene:108062Re-query CCDS DB by CCDS ID:30389.1Re-query CCDS DB by GeneID:108062See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033609.8 ENSMUSP00000033609.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033609.8Link to Ensembl Protein Viewer:ENSMUSP00000033609.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033609Re-query CCDS DB by Protein ID:ENSMUSP00000033609
Original member Current member NCBI NM_133196.6 NP_573459.1 Accepted alive Link to Nucleotide Sequence:NM_133196.6Link to Protein Sequence:NP_573459.1Re-query CCDS DB by Nucleotide ID:NM_133196Re-query CCDS DB by Protein ID:NP_573459Link to BLAST:NP_573459.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573459.1 580 Q8BIQ5-1 580 100% 0 0

Chromosomal Locations for CCDS 30389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134059365 134059422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134060644 134060722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134060945 134061114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134061694 134061830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134062368 134062487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134062598 134062735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134066261 134066384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134069845 134069907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134073136 134073277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134074126 134074310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134074513 134074805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134080327 134080437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134081191 134081313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGGCGGGTTTGCCAGTGAGAGACCCTGCGGTGGATCGTTCCCTGCGCTCCGTCTTCGTGGGAAACATCC
CTTATGAAGCTACTGAAGAACAACTGAAGGACATTTTCTCTGAGGTTGGGCCTGTTGTTAGTTTCAGATT
GGTATACGATAGGGAGACAGGAAAACCAAAGGGCTATGGCTTCTGCGAGTACCAAGACCAAGAGACAGCA
CTTAGTGCCATGCGGAACTTGAATGGGCGTGAATTCAGCGGGAGAGCACTTCGAGTGGATAATGCTGCCA
GTGAAAAGAACAAGGAGGAACTGAAGAGCCTTGGCACTGGTGCACCTGTCATAGAGTCACCTTATGGAGA
AAGCATCAGCCCTGAGGATGCCCCTGAATCCATTAGCAAAGCAGTTGCCAGTCTTCCACCAGAACAGATG
TTTGAGTTGATGAAACAAATGAAGCTCTGTGTCCAGAATAGTCCCCAGGAAGCACGAAACATGTTGCTTC
AGAATCCACAGCTGGCTTATGCTTTGTTGCAAGCACAGGTAGTGATGAGAATTGTGGATCCTGAGATTGC
GCTGAAAATTCTGCATCGCCAGACAAATATCCCAACGCTGATTTCAGGCAACCCTCAGCCAGTTCATGTT
GCTGGGCCTGGCTCAGGACCCAATGTTTCAATGAACCAGCAGAATCCGCAGGCCCCTCAGGCTCAATCTT
TGGGTGGAATGCATGTCAATGGCGCACCTCCTATGATGCAAGCTTCTATGCCAGGTGGAGTTCCAGCCCC
AGTGCAGATGGCAGCTGCTGTAGGAGGACCTGGCCCTGGTTCCTTAGCCCCTGCAGGAGTTATGCAAGCC
CAAGTTGGAATGCAAGGAGCTGGACCAGTGCCCATGGAACGAGGACAAGTGCCAATGCAAGACCCCAGAG
CAGCTATGCAGCGGGGAGCCTTGCCTACCAACGTCCCAACTCCTCGTGGTCTTTTAGGTGATGCTCCCAA
TGACCCGCGGGGAGGCACTTTAATGACTGTAACTGGAGACGTAGAACCTAGAGCTTACCTGGGACCACCA
CCACCACCTCATCAGGGCCCACCCATGCACCATGTTCCTGGTCATGAAGGTCGTGGACCGCCTCCACATG
ACATGAGAGGAGGACCCCTAGCTGAGCCGAGACCTTTAATGGCAGAACCAAGAGGACCCATGCTAGATCA
GAGGGGCCCACCTCTGGATGCCAGAGGTGGAAGAGATCCCCGAGGATTAGATGCACGGGGGATGGAGGCC
AGAGCCATGGAAGCAAGAGGACTAGATGCCAGAGGACTGGAAGCCCGTGCCATGGAGGCCCGTGCCATGG
AGGCCCGTGCCATGGAAGCCCGTGCCATGGAAGCCCGTGCCATGGAGGCTCGTGCCATGGAGGCCAGAGG
CATGGACACCAGAGGCCCAGTACCTGGACCTAGAGGACCTATGCCTAGTGGAATCCAAGGTCCCAATCCA
ATGAACATGGGGGCAGTTGTTCCCCAGGGATCCAGACAGGTACCAGTCATGCAGGGAGCAGGCATGCAAG
GAGCAAGCATGCAAGGTGGAAGCCAGCCTGGTGGCTTTAGTCCTGGACAGAGCCAAGTCACACCCCAGGA
TCATGAGAAGGCTGCTTTGATTATGCAGGTCCTTCAGCTCACTGCAGACCAGATCGCCATGCTGCCTCCT
GAGCAAAGACAGAGTATCCTAATCTTAAAGGAACAGATACAGAAATCCACTGGGGCACCTTGA

Translation (580 aa):
MAGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA
LSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGESISPEDAPESISKAVASLPPEQM
FELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLISGNPQPVHV
AGPGSGPNVSMNQQNPQAPQAQSLGGMHVNGAPPMMQASMPGGVPAPVQMAAAVGGPGPGSLAPAGVMQA
QVGMQGAGPVPMERGQVPMQDPRAAMQRGALPTNVPTPRGLLGDAPNDPRGGTLMTVTGDVEPRAYLGPP
PPPHQGPPMHHVPGHEGRGPPPHDMRGGPLAEPRPLMAEPRGPMLDQRGPPLDARGGRDPRGLDARGMEA
RAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEARAMEARGMDTRGPVPGPRGPMPSGIQGPNP
MNMGAVVPQGSRQVPVMQGAGMQGASMQGGSQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPP
EQRQSILILKEQIQKSTGAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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