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Report for CCDS29808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29808.1 Public Mus musculus 19 Tm9sf3 23 108 98 CCDS HistoryNCBI Gene:107358Re-query CCDS DB by CCDS ID:29808.1Re-query CCDS DB by GeneID:107358See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000237871.1 ENSMUSP00000158318.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237871.1Link to Ensembl Protein Viewer:ENSMUSP00000158318.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237871Re-query CCDS DB by Protein ID:ENSMUSP00000158318
Original member Current member NCBI NM_133352.2 NP_579930.1 Accepted alive Link to Nucleotide Sequence:NM_133352.2Link to Protein Sequence:NP_579930.1Re-query CCDS DB by Nucleotide ID:NM_133352Re-query CCDS DB by Protein ID:NP_579930Link to BLAST:NP_579930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_579930.1 587 Q9ET30 587 100% 0 0

Chromosomal Locations for CCDS 29808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41215072 41215139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41217101 41217177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41217348 41217431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41218170 41218316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41221237 41221305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41223084 41223223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41232343 41232473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41234681 41234775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41238678 41238844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41240577 41240708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41245444 41245521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41246643 41246803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41247906 41248028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41256145 41256340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41263759 41263854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGAGGCCGCTGCCGGGCGCTCCTGGCGTGGCGGCGGCCGCCGCGTTGTTGTTGCTGCTGCTGCCCCGGG
CTCGGTCTGACGAGCACGAACACACGTATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGG
GCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGT
ATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACA
TTAAATTTAAAGATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGC
GTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGGGTATT
GTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTA
ATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAAT
ACAGATGTCATATTCGGTAAAATGGAAAAAATCGGATGTAAAATTTGAAGATCGATTCGATAAATATCTT
GATCCATCCTTTTTTCAGCATAGGATTCACTGGTTTTCAATTTTTAATTCCTTCATGATGGTGATCTTCT
TAGTGGGATTAGTTTCAATGATTTTAATGAGAACTTTAAGGAAAGATTATGCCCGATACAGTAAAGAAGA
AGAAATGGATGACATGGACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTC
AGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTC
TCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGAGAGGGGGTCAATGCTCAGCACAGCCAT
ATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAGGA
AGGAGATGGATAAAGCAGATGTTTATCGGGGCATTCCTTATCCCAGCTATGGTGTGTGGCACTGCATTCT
TCATCAACTTTATAGCCATTTATTACCATGCCTCTAGAGCCATTCCTTTTGGAACAATGGTGGCCGTTTG
TTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGT
CAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAATGGTTTATGGAGC
CTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAATGTACTTCATCTT
CACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGCTTCATGATGCTGGTGCTGGTCATCCTGTGC
ATTGTGACTGTCTGTGTGACCATTGTCTGCACATACTTCCTGCTAAACGCAGAGGATTACAGGTGGCAGT
GGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTT
CAAAACCAAGATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCC
TTGGGGATAATGTGTGGAGCAATCGGTTACATGGGAACAAGTGCCTTTGTTCGAAAAATCTATACTAATG
TGAAAATTGACTAG

Translation (587 aa):
MRPLPGAPGVAAAAALLLLLLPRARSDEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKS
ISHYHETLGEALQGVELEFSGLDIKFKDDVMPGTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGI
VGEADENGEDYYLWTYKKLEIGFNGNRIVDVNLTSEGKVKLVPNTKIQMSYSVKWKKSDVKFEDRFDKYL
DPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDRDLGDEYGWKQVHGDVF
RPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLYTERGSMLSTAIFVYAATSPVNGYFGGSLYARQGG
RRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSG
QPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILC
IVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTA
LGIMCGAIGYMGTSAFVRKIYTNVKID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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