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Report for CCDS29251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29251.1 Public Mus musculus 18 Snx24 23 108 98 CCDS HistoryNCBI Gene:69226Re-query CCDS DB by CCDS ID:29251.1Re-query CCDS DB by GeneID:69226See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29251.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025417.8 ENSMUSP00000025417.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025417.8Link to Ensembl Protein Viewer:ENSMUSP00000025417.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025417Re-query CCDS DB by Protein ID:ENSMUSP00000025417
Original member Current member EBI ENSMUST00000165032.8 ENSMUSP00000131423.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165032.8Link to Ensembl Protein Viewer:ENSMUSP00000131423.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165032Re-query CCDS DB by Protein ID:ENSMUSP00000131423
Original member Current member NCBI NM_001370761.1 NP_001357690.1 Accepted alive Link to Nucleotide Sequence:NM_001370761.1Link to Protein Sequence:NP_001357690.1Re-query CCDS DB by Nucleotide ID:NM_001370761Re-query CCDS DB by Protein ID:NP_001357690Link to BLAST:NP_001357690.1
Original member Current member NCBI NM_029394.4 NP_083670.1 Accepted alive Link to Nucleotide Sequence:NM_029394.4Link to Protein Sequence:NP_083670.1Re-query CCDS DB by Nucleotide ID:NM_029394Re-query CCDS DB by Protein ID:NP_083670Link to BLAST:NP_083670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357690.1 169 Q9CRB0 169 100% 0 0
NP_083670.1 169 Q9CRB0 169 100% 0 0

Chromosomal Locations for CCDS 29251.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 53245793 53245852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53327412 53327495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53340130 53340234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53383070 53383164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53384617 53384649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53385178 53385242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 53389517 53389584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGGAGGTCTACATCCCGTCCTTTCGCCACGAGGACAGCGATCTGGAGCGCGGCTACACGGTGTTTAAAA
TAGAAGTGCTAATGAACGGAAGAAAACATTTTGTTGAGAAACGGTACAGCGAATTCCATGCCTTGCACAA
AAAGCTTAAGAAATGTATAAAGACTCCAGAAATCCCTTCTAAACACGTCAGGAACTGGGTCCCCAAAGTC
TTGGAACAACGGCGGCAAGGCCTGGAAACGTATTTACAGGCCGTCATTTTGGAGAATGAAGAGCTTCCCA
AACTCTTCCTTGACTTCCTCAATGTACGGCACTTGCCCTCTCTACCGAAAGCAGAAAGCTGTGGATCTTT
CGATGAGACAGAGTCTGAAGAGTCAAGCAAGCTGTCCCACCAGCCGGTGCTGCTGTTCCTTGGGGATCCA
TACGTCTTGCCTGCAGCCAGCGATTTTCCAAATGTGGTCATCGAAGGAGTTCTTCATGGGATATTTTTCT
CTCACCTGCAGCCCAGGTAG

Translation (169 aa):
MEVYIPSFRHEDSDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKV
LEQRRQGLETYLQAVILENEELPKLFLDFLNVRHLPSLPKAESCGSFDETESEESSKLSHQPVLLFLGDP
YVLPAASDFPNVVIEGVLHGIFFSHLQPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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