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Report for CCDS2861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2861.1 Public Homo sapiens 3 GNL3 24 110 108 CCDS HistoryNCBI Gene:26354Re-query CCDS DB by CCDS ID:2861.1Re-query CCDS DB by GeneID:26354See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2861.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418458.6 ENSP00000395772.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000418458.6Link to Ensembl Protein Viewer:ENSP00000395772.1Re-query CCDS DB by Nucleotide ID:ENST00000418458Re-query CCDS DB by Protein ID:ENSP00000395772
Original member Current member NCBI NM_014366.5 NP_055181.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014366.5Link to Protein Sequence:NP_055181.3Re-query CCDS DB by Nucleotide ID:NM_014366Re-query CCDS DB by Protein ID:NP_055181Link to BLAST:NP_055181.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055181.3 549 Q9BVP2-1 549 100% 0 0

Chromosomal Locations for CCDS 2861.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52686093 52686105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52686769 52686827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52687246 52687383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52687502 52687615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52688109 52688192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52689074 52689206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52690592 52690704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52690945 52691071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52691542 52691629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52692872 52693046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52693187 52693329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52693408 52693544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52693632 52693807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52694037 52694103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52694193 52694275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGAAAAGGCCTAAGTTAAAGAAAGCAAGTAAACGCATGACCTGCCATAAGCGGTATAAAATCCAAAAAA
AG
GTTCGAGAACATCATCGAAAATTAAGAAAGGAGGCTAAAAAGCGGGGTCACAAGAAGCCTAGGAAAGA
C
CCAGGAGTTCCAAACAGTGCTCCCTTTAAGGAGGCTCTTCTTAGGGAAGCTGAGCTAAGGAAACAGAGG
CTT
GAAGAACTAAAACAGCAGCAGAAACTTGACAGGCAGAAGGAACTAGAAAAGAAAAGAAAACTTGAAA
CT
AATCCTGATATTAAGCCATCAAATGTGGAACCTATGGAAAAGGAGTTTGGGCTTTGCAAAACTGAGAA
C
AAAGCCAAGTCGGGCAAACAGAATTCAAAGAAGCTGTACTGCCAAGAACTTAAAAAGGTGATTGAAGCC
TCC
GATGTTGTCCTAGAGGTGTTGGATGCCAGAGATCCTCTTGGTTGCAGATGTCCTCAGGTAGAAGAGG
CC
ATTGTCCAGAGTGGACAGAAAAAGCTGGTACTTATATTAAATAAATCAGATCTGGTACCAAAGGAGAA
T
TTGGAGAGCTGGCTAAATTATTTGAAGAAAGAATTGCCAACAGTGGTGTTCAGAGCCTCAACAAAACCA
AAG
GATAAAGGGAAGATAACCAAGCGTGTGAAGGCAAAGAAGAATGCTGCTCCATTCAGAAGTGAAGTCT
GC
TTTGGGAAAGAGGGCCTTTGGAAACTTCTTGGAGGTTTTCAGGAAACTTGCAGCAAAGCCATTCGGGT
T
GGAGTAATTGGTTTCCCAAATGTGGGGAAAAGCAGCATTATCAATAGCTTAAAACAAGAACAGATGTGT
AAT
GTTGGTGTATCCATGGGGCTTACAAGGAGCATGCAAGTTGTCCCCTTGGACAAACAGATCACAATCA
TA
GATAGTCCGAGCTTCATCGTATCTCCACTTAATTCCTCCTCTGCGCTTGCTCTGCGAAGTCCAGCAAG
T
ATTGAAGTAGTAAAACCGATGGAGGCTGCCAGTGCCATCCTTTCCCAGGCTGATGCTCGACAGGTAGTA
CTG
AAATATACTGTCCCAGGCTACAGGAATTCTCTGGAATTTTTTACTGTGCTTGCTCAGAGAAGAGGTA
TG
CACCAAAAAGGTGGAATCCCAAATGTTGAAGGTGCTGCCAAACTGCTGTGGTCTGAGTGGACAGGTGC
C
TCATTAGCTTACTATTGCCATCCCCCTACATCTTGGACTCCTCCTCCATATTTTAATGAGAGTATTGTG
GTA
GACATGAAAAGCGGCTTCAATCTGGAAGAACTGGAAAAGAACAATGCACAGAGCATAAGAGCCATCA
AG
GGCCCTCATTTGGCCAATAGCATCCTTTTCCAGTCTTCCGGTCTGACAAATGGAATAATAGAAGAAAA
G
GACATACATGAAGAATTGCCAAAACGGAAAGAAAGGAAGCAGGAGGAGAGGGAGGATGACAAAGACAGT
GAC
CAGGAAACTGTTGATGAAGAAGTTGATGAAAACAGCTCAGGCATGTTTGCTGCAGAAGAGACAGGGG
AG
GCACTGTCTGAGGAGACTACAGCAGGTGAACAGTCTACAAGGTCTTTTATCTTGGATAAAATCATTGA
A
GAGGATGATGCTTATGACTTCAGTACAGATTATGTGTAA


Translation (549 aa):
MKRPKLKKASKRMTCHKRYKIQKKVREHHRKLRKEAKKRGHKKPRKDPGVPNSAPFKEALLREAELRKQR
L
EELKQQQKLDRQKELEKKRKLETNPDIKPSNVEPMEK
EFGLCKTENKAKSGKQNSKKLYCQELKKVIEA
S
DVVLEVLDARDPLGCRCPQVEEAIVQSGQKKLVLILNKS
DLVPKENLESWLNYLKKELPTVVFRASTKP
K
DKGKITK
RVKAKKNAAPFRSEVCFGKEGLWKLLGGFQETCSKAIRVGVIGFPNVGKSSIINSLKQEQMC
N
VGVSMGLT
RSMQVVPLDKQITIIDSPSFIVSPLNSSSALALRSPASIEVVKPMEAASAILSQADARQVV
L
KYTVPGYRNSLEFFTVLAQRRGMHQKGGIPNVEGAAKLLWSEWT
GASLAYYCHPPTSWTPPPYFNESIV
V
DMKSGFNLEELEKNNAQSIR
AIKGPHLANSILFQSSGLTNGIIEEKDIHEELPKRKERKQEEREDDKDS
D
QETVDEEVD
ENSSGMFAAEETGEALSEETTAGEQSTRSFILDKIIEEDDAYDFSTDYV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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