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Report for CCDS28609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28609.1 Public Mus musculus 17 Cbs 23 108 98 CCDS HistoryNCBI Gene:12411Re-query CCDS DB by CCDS ID:28609.1Re-query CCDS DB by GeneID:12411See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067801.13 ENSMUSP00000066878.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067801.13Link to Ensembl Protein Viewer:ENSMUSP00000066878.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067801Re-query CCDS DB by Protein ID:ENSMUSP00000066878
Original member Current member EBI ENSMUST00000236853.1 ENSMUSP00000158269.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236853.1Link to Ensembl Protein Viewer:ENSMUSP00000158269.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236853Re-query CCDS DB by Protein ID:ENSMUSP00000158269
Original member NCBI NM_144855.3 NP_659104.1 Updated not alive Link to Nucleotide Sequence:NM_144855.3Link to Protein Sequence:NP_659104.1Re-query CCDS DB by Nucleotide ID:NM_144855Re-query CCDS DB by Protein ID:NP_659104
Current member NCBI NM_144855.4 NP_659104.1 Accepted alive Link to Nucleotide Sequence:NM_144855.4Link to Protein Sequence:NP_659104.1Re-query CCDS DB by Nucleotide ID:NM_144855Re-query CCDS DB by Protein ID:NP_659104Link to BLAST:NP_659104.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659104.1 561 Q91WT9-1 561 100% 0 0

Chromosomal Locations for CCDS 28609.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31613190 31613293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31614529 31614570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31615474 31615558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31616046 31616154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31617127 31617261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31617388 31617462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31619138 31619243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31620929 31621013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31621438 31621563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31622427 31622518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31624229 31624298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31624999 31625133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31625491 31625570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31625883 31626017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31627476 31627582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31632828 31633027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGCCTTCAGGGACATCCCAGTGTGAAGATGGCTCTGCTGGGGGCTTCCAGCACTTGGACATGCACTCAG
AAAAGAGACAACTGGAGAAGGGCCCCTCAGGGGACAAGGATCGAGTCTGGATCCGGCCTGATACCCCAAG
CAGATGTACCTGGCAGCTGGGCAGGGCCATGGCGGACTCCCCACATTATCACACAGTGCTGACCAAATCC
CCCAAAATTTTACCAGATATTCTGAGGAAAATTGGGAACACCCCTATGGTCAGAATCAACAAGATCTCAA
AGAATGCCGGTCTCAAGTGTGAGCTCTTGGCCAAGTGTGAGTTCTTCAATGCGGGTGGGAGTGTGAAGGA
CCGCATCAGCCTTCGGATGATCGAAGATGCTGAGCGAGCTGGAAACTTGAAGCCTGGAGACACTATCATT
GAGCCAACTTCTGGCAACACAGGGATCGGGCTGGCTCTGGCTGCTGCAGTGAAGGGCTATCGCTGCATTA
TCGTGATGCCGGAGAAGATGAGTATGGAGAAGGTGGATGTGCTGCGGGCTCTGGGAGCCGAGATTGTGAG
GACGCCCACCAATGCCAGATTTGATTCCCCCGAGTCCCACGTGGGAGTGGCATGGCGACTGAAGAACGAA
ATCCCTAATTCTCACATTCTGGACCAGTACCGCAATGCCAGCAACCCTTTGGCACACTACGATGACACCG
CCGAGGAGATCCTGCAGCAGTGTGACGGGAAGCTGGATATGCTGGTGGCTTCAGCAGGCACGGGTGGCAC
CATCACAGGGATCGCCAGAAAGCTGAAGGAGAAGTGCCCTGGCTGTAAAATCATCGGTGTCGATCCTGAA
GGCTCCATCCTTGCGGAGCCCGAGGAGCTGAACCAGACGGAGCAAACAGCCTATGAGGTGGAAGGGATTG
GCTACGACTTCATCCCGACAGTCCTGGACAGGGCGGTGGTGGATAAGTGGTTCAAGAGCAACGATGAAGA
TTCCTTCGCCTTTGCCCGCATGCTCATCGCACAGGAAGGACTGCTATGTGGTGGAAGCTCTGGCAGCGCC
ATGGCTGTGGCTGTGAAGGCTGCCCGGGAGCTGCAGGAAGGGCAGCGCTGTGTGGTCATCCTGCCTGACT
CTGTGCGGAACTACATGTCCAAGTTCCTGAGTGACAAATGGATGCTGCAGAAAGGTTTCATGAAAGAGGA
GCTCTCAGTGAAGAGGCCCTGGTGGTGGCGTCTGCGTGTTCAAGAGCTGAGCCTGTCGGCCCCGCTGACC
GTGTTGCCCACGGTCACCTGTGAGGACACCATCGCCATCCTCCGGGAGAAGGGTTTTGACCAGGCACCTG
TGGTCAACGAGTCTGGGGCCATCCTAGGGATGGTGACCCTCGGGAACATGCTGTCATCCCTGCTGGCTGG
AAAGGTGCGGCCATCAGACGAAGTCTGCAAAGTCCTCTACAAGCAGTTCAAACCGATCCACCTGACCGAC
ACGCTGGGCACACTCTCTCACATCCTGGAGATGGACCACTTCGCCCTGGTGGTCCACGAGCAGATCCAAT
CACGAGACCAGGCCTGGTCAGGAGTGGTGGGGGGGCCCACAGACTGCAGCAATGGCATGTCCAGCAAGCA
GCAGATGGTGTTTGGGGTTGTCACTGCCATTGACCTGCTAAACTTCGTGGCAGCCCGTGAGCAGACCCAG
ACATAG

Translation (561 aa):
MPSGTSQCEDGSAGGFQHLDMHSEKRQLEKGPSGDKDRVWIRPDTPSRCTWQLGRAMADSPHYHTVLTKS
PKILPDILRKIGNTPMVRINKISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGNLKPGDTII
EPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNE
IPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKLDMLVASAGTGGTITGIARKLKEKCPGCKIIGVDPE
GSILAEPEELNQTEQTAYEVEGIGYDFIPTVLDRAVVDKWFKSNDEDSFAFARMLIAQEGLLCGGSSGSA
MAVAVKAARELQEGQRCVVILPDSVRNYMSKFLSDKWMLQKGFMKEELSVKRPWWWRLRVQELSLSAPLT
VLPTVTCEDTIAILREKGFDQAPVVNESGAILGMVTLGNMLSSLLAGKVRPSDEVCKVLYKQFKPIHLTD
TLGTLSHILEMDHFALVVHEQIQSRDQAWSGVVGGPTDCSNGMSSKQQMVFGVVTAIDLLNFVAAREQTQ
T


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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