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Report for CCDS28553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28553.1 Public Mus musculus 17 Ergic1 23 108 98 CCDS HistoryNCBI Gene:67458Re-query CCDS DB by CCDS ID:28553.1Re-query CCDS DB by GeneID:67458See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167662.7 ENSMUSP00000132922.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167662.7Link to Ensembl Protein Viewer:ENSMUSP00000132922.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167662Re-query CCDS DB by Protein ID:ENSMUSP00000132922
Original member Current member NCBI NM_026170.3 NP_080446.1 Accepted alive Link to Nucleotide Sequence:NM_026170.3Link to Protein Sequence:NP_080446.1Re-query CCDS DB by Nucleotide ID:NM_026170Re-query CCDS DB by Protein ID:NP_080446Link to BLAST:NP_080446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080446.1 290 Q9DC16 290 100% 0 0

Chromosomal Locations for CCDS 28553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26561613 26561632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26608593 26608654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26614356 26614428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26624590 26624684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26629555 26629679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26634417 26634521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26635986 26636046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26638743 26638843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26641582 26641704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26655067 26655174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGCCCTTTGACTTCAGGAGGTTTGACATCTACAGGAAGGTGCCCAAGGACCTCACACAGCCGACATATA
CTGGTGCCATTATCTCCATCTGCTGCTGCCTCTTCATCCTCTTCCTCTTCCTGTCGGAGCTCACTGGATT
CATCACAACAGAAGTGGTGAATGAGCTCTACGTCGATGACCCAGACAAGGACAGCGGAGGCAAAATTGAC
GTCAGTCTCAACATCAGTTTACCCAATTTGCACTGTGAATTGGTCGGGCTTGACATCCAAGATGAGATGG
GCAGACACGAAGTGGGCCACATCGACAATTCCATGAAGATCCCGCTGAATAATGGAGCCGGCTGCCGCTT
CGAGGGCCAGTTCAGCATCAACAAGGTTCCCGGCAACTTCCATGTGTCCACACACAGTGCCACAGCGCAG
CCACAGAACCCGGACATGACACATACCATCCATAAACTCTCCTTTGGGGATACGCTACAGGTCCAGAATG
TTCACGGGGCTTTCAATGCTCTTGGGGGAGCAGACAGACTCACCTCCAACCCCCTGGCCTCCCATGACTA
CATCTTGAAGATTGTACCCACAGTGTATGAGGACAAGAGCGGCAAGCAGCGCTACTCCTACCAGTACACA
GTGGCCAACAAGGAGTACGTTGCCTACAGCCACACGGGACGCATTATCCCTGCCATCTGGTTCCGCTATG
ACCTCAGCCCCATCACAGTCAAGTACACAGAGAGAAGACAACCCCTGTACAGGTTCATCACCACAATCTG
TGCCATCATCGGCGGAACCTTCACTGTCGCCGGCATTCTGGACTCCTGTATCTTCACAGCCTCAGAAGCG
TGGAAGAAGATCCAGCTGGGCAAAATTCACTGA

Translation (290 aa):
MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDDPDKDSGGKID
VSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQ
PQNPDMTHTIHKLSFGDTLQVQNVHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYT
VANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA
WKKIQLGKIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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