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Report for CCDS2854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2854.1 Public Homo sapiens 3 PHF7 24 110 108 CCDS HistoryNCBI Gene:51533Re-query CCDS DB by CCDS ID:2854.1Re-query CCDS DB by GeneID:51533See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327906.8 ENSP00000333024.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327906.8Link to Ensembl Protein Viewer:ENSP00000333024.3Re-query CCDS DB by Nucleotide ID:ENST00000327906Re-query CCDS DB by Protein ID:ENSP00000333024
Original member Current member NCBI NM_001321126.2 NP_001308055.1 Accepted alive Link to Nucleotide Sequence:NM_001321126.2Link to Protein Sequence:NP_001308055.1Re-query CCDS DB by Nucleotide ID:NM_001321126Re-query CCDS DB by Protein ID:NP_001308055Link to BLAST:NP_001308055.1
Original member Current member NCBI NM_001321127.2 NP_001308056.1 Accepted alive Link to Nucleotide Sequence:NM_001321127.2Link to Protein Sequence:NP_001308056.1Re-query CCDS DB by Nucleotide ID:NM_001321127Re-query CCDS DB by Protein ID:NP_001308056Link to BLAST:NP_001308056.1
Original member Current member NCBI NM_016483.7 NP_057567.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016483.7Link to Protein Sequence:NP_057567.3Re-query CCDS DB by Nucleotide ID:NM_016483Re-query CCDS DB by Protein ID:NP_057567Link to BLAST:NP_057567.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308055.1 381 Q9BWX1-1 381 100% 0 0
NP_001308056.1 381 Q9BWX1-1 381 100% 0 0
NP_057567.3 381 Q9BWX1-1 381 100% 0 0

Chromosomal Locations for CCDS 2854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52412880 52412920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52413996 52414048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52414496 52414587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52419833 52419934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52420311 52420435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52420903 52421062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52421648 52421754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52422222 52422338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52422760 52422881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52423091 52423317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGAAGACTGTAAAAGAAAAGAAGGAATGCCAGAGATTGAGAAAATCTGCCAAGACTAGGAGGGTAACCC
AGAGGAAACCGTCTTCAGGGCCTGTTTGCTGGCTATGCCTTCGAGAACCTGGGGATCCCGAAAAATTAGG
GGAATTTCTTCAGAAAGACAATATCAGCGTGCATTATTTCTGTCTTATCTTATCTAGTAAGCTGCCTCAG
AGGGGCCAGTCCAACAGAGGCTTCCATGGATTTCTGCCTGAAGACATCAAAAAGGAGGCAGCCCGGGCTT
CTAGGAAGATCTGCTTTGTGTGCAAGAAAAAGGGAGCTGCTATCAACTGCCAGAAGGATCAGTGCCTCAG
AAACTTCCATCTGCCTTGTGGCCAAGAAAGGGGTTGCCTTTCACAATTTTTTGGAGAGTACAAATCATTT
TGTGACAAACATCGCCCAACACAGAACATCCAACATGGGCATGTGGGGGAGGAAAGCTGCATCTTATGTT
GTGAAGACTTATCCCAACAGAGTGTTGAGAACATCCAGAGCCCGTGTTGTAGTCAAGCCATCTACCACCG
CAAGTGCATACAGAAATATGCCCACACATCAGCAAAGCATTTCTTCAAATGTCCACAGTGTAACAATCGA
AAAGAGTTTCCTCAAGAAATGCTGAGAATGGGAATTCATATTCCAGACAGAGATGCTGCCTGGGAACTCG
AGCCAGGGGCTTTCTCAGACTTATATCAGCGCTATCAGCACTGTGATGCCCCCATCTGTCTGTATGAACA
AGGCAGAGACAGCTTTGAGGATGAAGGGAGGTGGTGCCTCATTCTGTGTGCTACATGCGGATCCCACGGA
ACCCACAGGGACTGCTCCTCTCTTAGATCTAACAGTAAGAAATGGGAGTGTGAGGAGTGTTCACCTGCTG
CAGCCACAGACTACATACCTGAAAACTCAGGGGACATCCCTTGCTGCAGCAGCACCTTCCACCCTGAGGA
ACATTTCTGCAGAGACAACACCTTGGAAGAGAATCCGGGCCTTTCTTGGACTGATTGGCCAGAACCTTCC
TTATTAGAAAAGCCAGAGTCCTCTCGTGGCAGGAGGAGCTACTCCTGGAGGTCCAAGGGTGTCAGAATCA
CTAACAGCTGCAAAAAATCCAAGTAA

Translation (381 aa):
MKTVKEKKECQRLRKSAKTRRVTQRKPSSGPVCWLCLREPGDPEKLGEFLQKDNISVHYFCLILSSKLPQ
RGQSNRGFHGFLPEDIKKEAARASRKICFVCKKKGAAINCQKDQCLRNFHLPCGQERGCLSQFFGEYKSF
CDKHRPTQNIQHGHVGEESCILCCEDLSQQSVENIQSPCCSQAIYHRKCIQKYAHTSAKHFFKCPQCNNR
KEFPQEMLRMGIHIPDRDAAWELEPGAFSDLYQRYQHCDAPICLYEQGRDSFEDEGRWCLILCATCGSHG
THRDCSSLRSNSKKWECEECSPAAATDYIPENSGDIPCCSSTFHPEEHFCRDNTLEENPGLSWTDWPEPS
LLEKPESSRGRRSYSWRSKGVRITNSCKKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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