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Report for CCDS28134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28134.1 Public Mus musculus 16 Muc13 23 108 98 CCDS HistoryNCBI Gene:17063Re-query CCDS DB by CCDS ID:28134.1Re-query CCDS DB by GeneID:17063See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023520.6 ENSMUSP00000023520.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023520.6Link to Ensembl Protein Viewer:ENSMUSP00000023520.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023520Re-query CCDS DB by Protein ID:ENSMUSP00000023520
Original member Current member EBI ENSMUST00000115044.7 ENSMUSP00000110696.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115044.7Link to Ensembl Protein Viewer:ENSMUSP00000110696.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115044Re-query CCDS DB by Protein ID:ENSMUSP00000110696
Original member Current member NCBI NM_010739.2 NP_034869.1 Accepted alive Link to Nucleotide Sequence:NM_010739.2Link to Protein Sequence:NP_034869.1Re-query CCDS DB by Nucleotide ID:NM_010739Re-query CCDS DB by Protein ID:NP_034869Link to BLAST:NP_034869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034869.1 573 P19467 573 100% 0 0

Chromosomal Locations for CCDS 28134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33794527 33794575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33798933 33799577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33803032 33803160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33804580 33804686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33806023 33806078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33807868 33808034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33810885 33811007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33811766 33811892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33812879 33812916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33814519 33814603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33815674 33815869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGAAAGGCTTCCTGCTTCTCTCTCTCAGTCTCCTTTTGGTGACCGTGGGTAGTTCATCTCAGGCCTCTA
GT
ACAACATCGTCTTCTGGTGGCACCAGTCCTCCCACCACAGTACAAAGTCAATCTCCAGGTAGTTCATC
T
CAGGCCTCTACTACAACATCGTCTTCTGGTGGCGCCAGTCCTCCCACCACGGTACAGAGTCAATCTCCA
GGT
AGTTCATCTCAGGCCTCTACTACAACATCGTCTTCTGGTGGCGCCAGTCCTCCCACCACGGTACAGA
GT
CAATCTCCAGGTAGTTCATCTCAGGCCTCTACTACAACATCGTCTTCTGGTGGCGCCAGTCCTCCCAC
C
ACGGTACAGAGTCAATCTCCAGGTAGTTCATCTCAGGCCTCTACTACAACATCGTCTTCTGGTGGCGCC
AGT
CCTCCCACCACGGTACAGAGTCAATCTCCAGGTAGTTCATCTCAGGCCTCTACTACAACATCGTCTT
CT
GGTGGCGCCAGTCCTCCCACCACGGTACAGAGTCAATCTCCAGGTAGTTCATCTCAGGTCTCTACTAC
A
ACATCGTCTTCTGGTGGCGCCAGTCCTCCCACCACGGTACAGAGTCAATCTCCAGGTAGTTCATCTCAG
CCC
GGACCAACTCAGCCTTCTGGTGGTGCCAGCTCTTCCACCGTGCCTAGCGGTGGAAGCACAGGTCCCA
GT
GATCTCTGCAACCCTAACCCCTGTAAAGGAACTGCTTCTTGTGTTAAGCTGCATAGCAAACACTTCTG
C
TTGTGTTTAGAAGGCTATTACTACAACTCGTCTCTGTCGTCATGTGTGAAAGGAACGACATTCCCTGGG
GAC
ATTAGCATGAGTGTGTCTGAAACAGCCAACTTGGAAGATGAAAACTCTGTGGGCTATCAAGAGTTGT
AC
AACAGTGTTACCGATTTTTTTGAAACAACATTTAATAAGACTGACTATGGACAGACTGTAATTATTAA
A
GTGAGCACAGCCCCTTCACGGTCAGCAAGATCTGCAATGCGTGATGCTACAAAGGACGTCAGTGTATCC
GTA
GTAAATATATTTGGAGCAGACACAAAAGAAACTGAAAAGAGTGTATCTTCTGCAATCGAAACTGCAA
TT
AAGACTAGTGGCAATGTGAAAGACTATGTCAGTATAAATTTGTGTGATCATTATGGTTGTGTAGGGAA
T
GACAGCAGTAAATGCCAGGACATTTTACAATGCACGTGCAAACCTGGGCTGGACAGGCTGAACCCACAG
GTT
CCTTTTTGTGTTGCTGTAACGTGCTCTCAGCCCTGCAATGCAGAGGAGAAGGAGCAGTGCTTAAAGA
TG
GATAACGGAGTAATGGATTGTGTGTGCATGCCGGGCTACCAGAGGGCAAACGGGAACAGGAAGTGTGA
A
GAGTGTCCATTTGGCTACAGCGGGATGAATTGCAAAGACCAATTTCAGCTGATCCTCACCATCGTGGGC
ACC
ATTGCTGGAGCCCTCATCCTCATCTTGCTGATTGCTTTTATCGTCTCTGCGAGGTCAAAGAACAAAA
AG
AAGGATGGAGAAGAGCAGAGGCTGATTGAGGATGACTTCCATAACCTACGACTGAGGCAGACCGGCTT
C
TCCAACTTAGGAGCGGACAACAGCATCTTCCCCAAAGTCAGAACAGGGGTCCCGAGTCAGACCCCTAAT
CCC
TACGCAAACCAGCGAAGCATGCCTCGCCCTGACTACTAG


Translation (573 aa):
MKGFLLLSLSLLLVTVGSSSQASSTTSSSGGTSPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSP
G
SSSQASTTTSSSGGASPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQASTTTSSSGGA
S
PPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPGSSSQVSTTTSSSGGASPPTTVQSQSPGSSSQ
P
GPTQPSGGASSSTVPSGGST
GPSDLCNPNPCKGTASCVKLHSKHFCLCLEGYYYNSSLSSCVKGTTFPG
D
ISMSVSETANLEDENSVGYQELYNSVTDF
FETTFNKTDYGQTVIIKVSTAPSRSARSAMRDATKDVSVS
V
VNIFGADTKETEKSVSSAIETAIKTSGNVKDYV
SINLCDHYGCVGNDSSKCQDILQCTCKPGLDRLNPQ
V
PFCV
AVTCSQPCNAEEKEQCLKMDNGVMDCVCMPGYQRANGNRKCEECPFGYSGMNCKDQFQLILTIVG
T
IAGALILILLIAFIVSA
RSKNKKKDGEEQRLIEDDFHNLRLRQTGFSNLGADNSIFPKVRTGVPSQTPN
P
YANQRSMPRPDY




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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