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Report for CCDS28016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28016.1 Public Mus musculus 16 Dgcr6 23 108 98 CCDS HistoryNCBI Gene:13353Re-query CCDS DB by CCDS ID:28016.1Re-query CCDS DB by GeneID:13353See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076757.11 ENSMUSP00000076044.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076757.11Link to Ensembl Protein Viewer:ENSMUSP00000076044.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076757Re-query CCDS DB by Protein ID:ENSMUSP00000076044
Original member Current member EBI ENSMUST00000143343.7 ENSMUSP00000123029.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143343.7Link to Ensembl Protein Viewer:ENSMUSP00000123029.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143343Re-query CCDS DB by Protein ID:ENSMUSP00000123029
Original member NCBI NM_010047.4 NP_034177.1 Updated not alive Link to Nucleotide Sequence:NM_010047.4Link to Protein Sequence:NP_034177.1Re-query CCDS DB by Nucleotide ID:NM_010047Re-query CCDS DB by Protein ID:NP_034177
Current member NCBI NM_010047.5 NP_034177.1 Accepted alive Link to Nucleotide Sequence:NM_010047.5Link to Protein Sequence:NP_034177.1Re-query CCDS DB by Nucleotide ID:NM_010047Re-query CCDS DB by Protein ID:NP_034177Link to BLAST:NP_034177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034177.1 170 O35347-2 170 99.4118% 0 1

Chromosomal Locations for CCDS 28016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18065159 18065184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18066696 18066856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18069424 18069524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18070091 18070231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18070878 18070961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGTAGAGAGCATGGCACCAGCCAGCTCCTTTCAGCAGCGCCTGTCCTACACCACGCTCAGCGACTTGG
CCCTGGCGCTGCTCGACGGAACGGTGTTTGAAATCGTGCAGGGTCTTCTGGAGATTCAGCACCTCACTGA
GAAGAGCCTCTACAACCAGAGACTGCGGCTGCAGAACGAACACCGAGTGCTCAGACAGACTCTAAGGCAG
AAGCACCTGGAAGCCCAGCAGTCCTGCCGGCCCCACAACTTGCCAGTGCTCCAGGCAGCTCAGCAGCGTG
AGCTGGAGGCCATGGAACATCGGATCCGGGAGGAGCAGCAGGCTATGGACCGAAAGATTGTCCTGGAGCT
GGACCGGAAGGTTGCCGACCAGCAGAGCACACTGGAGAAGGCAGGGGTAGCTGGTTTCTACGTGACCACC
AATCCTCAGGAGCTGACGCTGCAGATGAACCTATTGGAACTCATCAGGAAGCTGCAGCAGAGGGGCTGCC
AAGTGGGAAAGGCAGCTCTGTGA

Translation (170 aa):
MVESMAPASSFQQRLSYTTLSDLALALLDGTVFEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQTLRQ
KHLEAQQSCRPHNLPVLQAAQQRELEAMEHRIREEQQAMDRKIVLELDRKVADQQSTLEKAGVAGFYVTT
NPQELTLQMNLLELIRKLQQRGCQVGKAAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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