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Report for CCDS26753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26753.1 Public Mus musculus 13 Srek1ip1 23 108 98 CCDS HistoryNCBI Gene:67288Re-query CCDS DB by CCDS ID:26753.1Re-query CCDS DB by GeneID:67288See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022230.14 ENSMUSP00000022230.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022230.14Link to Ensembl Protein Viewer:ENSMUSP00000022230.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022230Re-query CCDS DB by Protein ID:ENSMUSP00000022230
Original member NCBI NM_026075.3 NP_080351.2 Updated not alive Link to Nucleotide Sequence:NM_026075.3Link to Protein Sequence:NP_080351.2Re-query CCDS DB by Nucleotide ID:NM_026075Re-query CCDS DB by Protein ID:NP_080351
Current member NCBI NM_026075.4 NP_080351.2 Accepted alive Link to Nucleotide Sequence:NM_026075.4Link to Protein Sequence:NP_080351.2Re-query CCDS DB by Nucleotide ID:NM_026075Re-query CCDS DB by Protein ID:NP_080351Link to BLAST:NP_080351.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080351.2 153 Q4V9W2-1 153 100% 0 0

Chromosomal Locations for CCDS 26753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 104817354 104817366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104827055 104827102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104832854 104832997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104834248 104834320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 104837365 104837548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCAGTCCCAGGTTGCAACAAGGACAATGTCAGAGCAGGCTGCAGAAAATGTGGCTACCCTGGTCATC
TGACTTTCGAGTGCCGCAATTTTCTCCGGGTAGATCCCAAAAGGGACATTGTGTTGGACGTCAGCAGCAC
CAGTAGTGAGGACAGTGATGAAGAAAATGAGGAGCTGAACAAGCTGCAGGCTCTGCAGGAGAAAAGAATA
AATGAAGAAGAGGAAAAGAAAAAGGAAAAGAGCAGGGAGAAAATTAAATTGAAGAAAAGGAGGAAAAGGT
CTTACTCCAGTGCCACTGAAGAGGACTCCGCAAAACAAAAGAAACAGAAGTATCAGAAAAAAGAAAAGAA
AAAGGAAAAAAAGAACAAGTCAAAGAAAGGAAAGCATCACAAAAAGGAAAAAAAGAAGAGAAAAAAGGAA
AAGCGTTCTTCCCCTTACCATTCTGAACTCACCAAAAAGTAA

Translation (153 aa):
MAVPGCNKDNVRAGCRKCGYPGHLTFECRNFLRVDPKRDIVLDVSSTSSEDSDEENEELNKLQALQEKRI
NEEEEKKKEKSREKIKLKKRRKRSYSSATEEDSAKQKKQKYQKKEKKKEKKNKSKKGKHHKKEKKKRKKE
KRSSPYHSELTKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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