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Report for CCDS25971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25971.1 Public Mus musculus 12 4930447C04Rik 23 108 98 CCDS HistoryNCBI Gene:75801Re-query CCDS DB by CCDS ID:25971.1Re-query CCDS DB by GeneID:75801See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044000.11 ENSMUSP00000035376.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044000.11Link to Ensembl Protein Viewer:ENSMUSP00000035376.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044000Re-query CCDS DB by Protein ID:ENSMUSP00000035376
Original member Current member NCBI NM_029444.2 NP_083720.1 Accepted alive Link to Nucleotide Sequence:NM_029444.2Link to Protein Sequence:NP_083720.1Re-query CCDS DB by Nucleotide ID:NM_029444Re-query CCDS DB by Protein ID:NP_083720Link to BLAST:NP_083720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083720.1 574 Q9CTN5-1 574 100% 0 0

Chromosomal Locations for CCDS 25971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72881228 72881424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72885223 72885280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72889708 72889846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72892804 72892979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72894984 72895045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72898487 72898533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72898710 72898795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72902413 72902489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72903216 72903334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72906191 72906279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72907821 72907941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72909771 72909813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72909904 72910091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72913185 72913274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72915356 72915482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72916674 72916730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72916823 72916871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGAATGATAATCTGTTTGTCAGTTTGGACAGGCTTTTGTTGGAATTTGTTTTCCAGTATGAGCAAGACA
TAAGTATTAAAGAAGATACGATTCAAAGAATTAATAAATGCCTTGAAAGTATTAAAGAAAATAAAGCAAA
TGTTTCTAAGCTACGTGAAGCTATAAACAAAGTAGATGAGGACATTGCTTTTCACTATAAACATAGTAAA
GAAATCAAAGACAGCTGTAGTAACTGGAAGCCAACATGTGATGTTTTTCATAAACATGAAGATTATATAA
AAGACCAGCTTACTGCTTACCAAGAAACCAATGAGAAAGACAAAAAAATGTATCATGATTATATATGTCA
GTATGAAGATGTTTTGAAACAATACCAACTAAAATACTCAGAAACACGTTTTTCATGTAAATATTATGAG
AAGAAAAAAGAACATGAAGAAATTAAAAATAGAGTGTTGGCATGTACTGAACAACTACAATTGAATGAAA
CTATTCTTATGAAATTTCTAGTGCCTGCTCCTTTCCCATCTCTGACTAAATGGACATTATACGTAGTTAA
TTTGAGATACAGAACACAAGATATTCTTAAACGTGCCAACAATTTTACCAAAAGATCATTTGAATTGGAG
AAAGAAGCAGATGATATGGAAATAGAAATTAATTCTTTAAATAAGATGGCAAGACTTTTTGAAAGTAAAA
CATTTTCAGAAGCTCTAGACGAAAAGAACAAAAATACAGAAAAGAGAAAAGAATTTGAAGAGAGAATTTT
TGAAAAAGATGAGCAAGTATCAAACAGAAGCTCTCAAAATAGCCAATTGTTACTGCCATGTGAGTCTCAG
AAATTTGTAAGAAATATGAATTCTTCAGAAGCAAGAGTTACAGATAAAAAAGAAGAAAGTTCAGCCAATC
AGTCAAAGTTTGTTAGAAGTGATGTGAGACAAAAAGAAAATAATCCACAGATATTTAATGACTCTGGTAT
GGATAGTAATTCAAAATCTTCACATATTCCAGCTGTTAAAAGTTCACAAGGTTTTATGCAATTCAGATTG
AATCAACCAAATTACAATCAACGGATTGAAAAAGAACATATAGATGCTGAATGTGGAGATAAAGAGACAG
TAAGACAAGTAAGAGAATCAAAATGTAGTACACAGGCCCTATACATTGAACACTTTGGAAAGTCCATAGA
AAATAATAGTGTTGAAGAGGAAAGAGATGAGAATTTTCCTCAAACTCCTGAAACTCCTTCATTTCTAAGA
ACTCCTGAAGCGCTGAAGACACCTGAATCTATGGAGAAAATGCAGTTCCCTAAAAGCCCCTTCTTTGAAA
TAACTAAAAATGCAACATCTGAAGGACATAAACAAAAGGATTCTCCTGGATTTTCATTTCTTATGAGTTA
CACCTCTAGATCACCTGGACTAAATTTATTTGATTCTTCTGTATCTGATTCAGAAATCTCATCGGATCAG
TTTAATGAACATTACTCTGCGGTAAATCTAAATCCTTCTTCATCACAACAAGGAATTGGAAACTTATTTG
GAAAATCAGAAGGAGAAGATGCCTTCACATTTTCTTTTTCATCAGACTCTTCTCACACATTTGGAGCTGG
AAAAGATGACTTTAGTTTTCCATTTTCTTTTGAACAGGATCCAAGCACAATGACTTCTTCTTCCTCAAAA
GATTTTTCATCCTCACAAAATAAAACACAATTTATGTTTTTTTGA

Translation (574 aa):
MNDNLFVSLDRLLLEFVFQYEQDISIKEDTIQRINKCLESIKENKANVSKLREAINKVDEDIAFHYKHSK
EIKDSCSNWKPTCDVFHKHEDYIKDQLTAYQETNEKDKKMYHDYICQYEDVLKQYQLKYSETRFSCKYYE
KKKEHEEIKNRVLACTEQLQLNETILMKFLVPAPFPSLTKWTLYVVNLRYRTQDILKRANNFTKRSFELE
KEADDMEIEINSLNKMARLFESKTFSEALDEKNKNTEKRKEFEERIFEKDEQVSNRSSQNSQLLLPCESQ
KFVRNMNSSEARVTDKKEESSANQSKFVRSDVRQKENNPQIFNDSGMDSNSKSSHIPAVKSSQGFMQFRL
NQPNYNQRIEKEHIDAECGDKETVRQVRESKCSTQALYIEHFGKSIENNSVEEERDENFPQTPETPSFLR
TPEALKTPESMEKMQFPKSPFFEITKNATSEGHKQKDSPGFSFLMSYTSRSPGLNLFDSSVSDSEISSDQ
FNEHYSAVNLNPSSSQQGIGNLFGKSEGEDAFTFSFSSDSSHTFGAGKDDFSFPFSFEQDPSTMTSSSSK
DFSSSQNKTQFMFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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