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Report for CCDS25701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25701.1 Public Mus musculus 11 Lgals3bp 23 108 98 CCDS HistoryNCBI Gene:19039Re-query CCDS DB by CCDS ID:25701.1Re-query CCDS DB by GeneID:19039See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043722.9 ENSMUSP00000035579.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043722.9Link to Ensembl Protein Viewer:ENSMUSP00000035579.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043722Re-query CCDS DB by Protein ID:ENSMUSP00000035579
Original member Current member NCBI NM_011150.3 NP_035280.1 Accepted alive Link to Nucleotide Sequence:NM_011150.3Link to Protein Sequence:NP_035280.1Re-query CCDS DB by Nucleotide ID:NM_011150Re-query CCDS DB by Protein ID:NP_035280Link to BLAST:NP_035280.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035280.1 577 Q07797 577 100% 0 0

Chromosomal Locations for CCDS 25701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118393018 118394122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118396591 118396843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118398121 118398252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118398380 118398571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118399728 118399779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGGCTCTCCTGTGGCTCCTCTCTGTGTTCTTGCTGGTTCCAGGGACTCAAGGTACAGAAGATGGAGACA
TGCGCTTGGTTAACGGGGCCTCAGCCAATGAGGGCCGCGTGGAGATCTTCTACAGAGGCCGGTGGGGGAC
AGTGTGTGACAACCTCTGGAACCTTTTGGATGCCCACGTCGTCTGCCGGGCCCTGGGCTATGAGAACGCC
ACCCAAGCACTGGGCAGAGCTGCCTTCGGGCCAGGAAAGGGACCGATCATGCTGGATGAGGTGGAATGTA
CAGGGACCGAGTCCTCACTGGCCAGTTGCAGATCCCTGGGTTGGATGGTGAGCCGCTGTGGGCACGAGAA
GGACGCAGGCGTGGTCTGCTCCAACGATACCACGGGGCTTCACATCCTGGACCTCTCTGGAGAGCTCTCA
GATGCACTGGGCCAGATCTTTGACAGCCAGCAGGGCTGCGACCTATTCATCCAGGTGACAGGGCAGGGGT
ATGAGGACCTGAGCCTCTGTGCCCACACGCTGATCCTGCGCACCAACCCCGAGGCCCAGGCCCTGTGGCA
AGTGGTGGGCAGCAGCGTCATCATGAGAGTGGATGCTGAGTGCATGCCTGTCGTCAGAGACTTCCTCAGG
TACTTTTACTCCCGAAGAATCGAGGTCAGCATGTCTTCTGTTAAGTGCTTGCACAAGCTAGCCTCTGCCT
ATGGGGCCACAGAGCTTCAGGACTACTGTGGACGGCTTTTTGCCACCCTCCTCCCCCAAGACCCCACTTT
CCATACTCCCTTGGACCTTTATGCGTACGCACGGGCCACCGGGGACTCTATGCTGGAAGATCTGTGTGTA
CAGTTTCTGGCCTGGAACTTCGAGCCTCTGACACAGTCTGAGTCCTGGTCGGCTGTTCCCACCACCTTGA
TCCAGGCTCTCCTCCCCAAGAGTGAGCTGGCTGTGTCTAGTGAGCTGGATCTGCTGAAGGCAGTGGACCA
GTGGAGCACAGAAACCATTGCCTCACACGAGGATATAGAGCGCCTGGTGGAACAGGTCCGCTTCCCCATG
ATGCTGCCCCAGGAGCTGTTCGAGCTGCAGTTCAACCTGTCCTTGTACCAAGATCACCAGGCACTGTTCC
AGAGGAAGACCATGCAGGCCTTGGAGTTCCACACAGTGCCTGTCGAAGTGCTGGCCAAGTACAAAGGCCT
GAACCTCACGGAGGACACCTACAAGCCCCGCCTTTACACCTCTTCCACCTGGAGTAGCTTGGTGATGGCC
TCCACCTGGAGGGCACAAAGATATGAATACAATCGATACAATCAGCTCTATACATATGGCTATGGCTCAG
TAGCCCGGTACAATAGCTACCAGTCCTTCCAAACCCCACAACACCCCAGCTTCCTCTTCAAGGACAAGCA
GATCTCCTGGTCAGCCACCTACCTCCCCACCATGCAGAGCTGCTGGAACTATGGCTTCTCGTGTACCTCT
AACGAGCTCCCTGTACTGGGCCTCACCACATCCAGCTACTCCAATCCGACAATTGGCTATGAGAACAGAG
TACTGATCCTCTGCGGAGGCTACAGTGTGGTGGATGTCACCAGCTTTGAAGGCTCCAAGGCCCCTATTCC
CACTGCCCTGGACACCAATAGTTCCAAGACTCCCTCCCTCTTTCCCTGTGCCTCAGGGGCCTTTAGCAGC
TTCCGTGTGGTCATACGCCCCTTCTACCTCACTAACTCCACTGACATGGTGTAA

Translation (577 aa):
MALLWLLSVFLLVPGTQGTEDGDMRLVNGASANEGRVEIFYRGRWGTVCDNLWNLLDAHVVCRALGYENA
TQALGRAAFGPGKGPIMLDEVECTGTESSLASCRSLGWMVSRCGHEKDAGVVCSNDTTGLHILDLSGELS
DALGQIFDSQQGCDLFIQVTGQGYEDLSLCAHTLILRTNPEAQALWQVVGSSVIMRVDAECMPVVRDFLR
YFYSRRIEVSMSSVKCLHKLASAYGATELQDYCGRLFATLLPQDPTFHTPLDLYAYARATGDSMLEDLCV
QFLAWNFEPLTQSESWSAVPTTLIQALLPKSELAVSSELDLLKAVDQWSTETIASHEDIERLVEQVRFPM
MLPQELFELQFNLSLYQDHQALFQRKTMQALEFHTVPVEVLAKYKGLNLTEDTYKPRLYTSSTWSSLVMA
STWRAQRYEYNRYNQLYTYGYGSVARYNSYQSFQTPQHPSFLFKDKQISWSATYLPTMQSCWNYGFSCTS
NELPVLGLTTSSYSNPTIGYENRVLILCGGYSVVDVTSFEGSKAPIPTALDTNSSKTPSLFPCASGAFSS
FRVVIRPFYLTNSTDMV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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