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Report for CCDS25576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25576.1 Public Mus musculus 11 Rgs9 23 108 98 CCDS HistoryNCBI Gene:19739Re-query CCDS DB by CCDS ID:25576.1Re-query CCDS DB by GeneID:19739See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020920.9 ENSMUSP00000020920.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020920.9Link to Ensembl Protein Viewer:ENSMUSP00000020920.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020920Re-query CCDS DB by Protein ID:ENSMUSP00000020920
Original member Current member NCBI NM_011268.2 NP_035398.2 Accepted alive Link to Nucleotide Sequence:NM_011268.2Link to Protein Sequence:NP_035398.2Re-query CCDS DB by Nucleotide ID:NM_011268Re-query CCDS DB by Protein ID:NP_035398Link to BLAST:NP_035398.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035398.2 675 O54828-1 675 100% 0 0

Chromosomal Locations for CCDS 25576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 109225626 109225776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109227126 109227604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109235900 109236017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109238094 109238179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109239454 109239592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109240850 109240937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109246453 109246568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109248064 109248177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109248979 109249040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109250027 109250056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109259836 109259898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109268923 109269004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109273276 109273352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109275261 109275319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109275579 109275630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109275820 109275926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109276570 109276620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109281449 109281545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109297938 109297994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGACGATCCGACACCAAGGCCAGCAGTACAGGCCGAGGATGGCATTTCTCCAAAAGATCGAAGCCCTGG
TGAAGGACATGCAGAACCCAGAGACGGGAGTCAGAATGCATAACCAGAGAGTCCTGGTCACCAGTGTCCC
TCACGCCATGACAGGAGGTGACGTGCTGCAGTGGATCACCCAGCGCCTTTGGATCTCTAACCTGGAGGCA
CAGAACCTGGGCAACTTTATTGTCAAGTATGGCTACATCTATCCTTTGCAAGACCCCAAGAATCTCATCC
TCAAGCCGGACAGCAGTCTCTACCGATTTCAGACGCCATATTTCTGGCCCACGCAGCAGTGGCCAGCTGA
AGACACAGACTACGCCATCTATCTAGCGAAGCGGAATATCAAGAAGAAGGGGATTTTAGAAGAATATGAA
AAGGAAAATTATGATTTCTTGAACAAGAAGATTAATTACAAGTGGGATTTTGTCATCATGCAGGCCAAAG
AGCAGTACCGGACTGGAAAGGAAAGGAACAAAGCCGACAGGTACGCGCTGGACTGCCAGGAGAAGGCGTA
TTGGCTGGTGCACCGAAGTCCGCCTGGAATGAACAATGTGTTAGACTACGGCCTGGACCGCGTGACCAAT
CCAAACGAAGTTAAGAAACAAACTGTCACTGCTGTCAGAAAAGAGATCATGTATTACCAACAGGCCTTAA
TGAGGTCCACAGTGAAGTCTTCGGTGTCTCTTGGAGGAATTGTCAAGTACAGCGAGCAGTTCTCGTCCAA
TGACGCCATCATGTCCGGCTGCCTTCCAAGCAATCCTTGGATAACAGACGACACCCAGTTCTGGGATTTA
AATGCCAAATTGGTGGAGATCCCAACCAAGATGCGAGTGGAGAGATGGGCTTTCAACTTCAGCGAACTGA
TTCGAGACCCCAAGGGTCGGCAGAGCTTCCAGTACTTTCTCAAGAAGGAATTTAGTGGGGAGAACCTAGG
ATTCTGGGAAGCCTGTGAGGACCTGAAGTACGGCGATCAGTCCAAGGTCAAGGAGAAAGCAGAGGAGATC
TACAAGCTGTTCCTGGCCCCAGGTGCGAGGCGGTGGATCAACATAGACGGCAAAACCATGGACATCACCG
TGAAGGGGCTCAGACACCCCCACCGCTATGTACTGGATGCAGCGCAGACCCACATTTACATGCTCATGAA
GAAGGATTCTTACGCACGCTATTTGAAATCTCCAATCTATAAAGAAATGCTGGCCAAAGCTATCGAGCCC
CAGGAAACCACCAAGAGAAGCTCCACCCTCCCATTTATGAGGCGTCACCTACGCTCCAGCCCAAGCCCTG
TCATTCTGCGGCAGCTGGAAGAAGAAGAGAAAGCTCGAGAAGCAGCCAACACCGTGGACATCACCCAGCC
AGGTCAGCACTTGGCTCCCAGTCCTCACCTGGCCGTGTATACAGGGACCTGCGTGCCTCCCTCTCCCTCC
AGTCCCTTCTCACCATCCTGCCGCTCCCCCAGGAAGCCCTTTGCTTCCCCGAGTCGCTTCATCCGGCGGC
CCAGCATTGCCATCTGCCCCTCGCCCAGCCGAGTGGCTTTGGAGGGTTCTTCGGGACTGGAGCCCAAGGG
GGAAGCCAGCTGGTCTGGCGCCAACTCTGGGCCCTCAGTCACTGAGAACAGAGAGCCCTCTGCAGACCAC
TCAAGACCCCAGCCCAGGGCCCCTCCCAAGGCCCGTGCAGCTCTGTCCCTTGGCAGGTTCCTGAGACGGG
GCTGTTTGGCATCACCAGTTTTTGCCAGGCTCTCACCCAAGTGCCCCTCTGTGTCACACGGGAAGGTGCA
GCCTCTGGGGGACATGGGCCAACAGCTGCCCAGGCTGAAACCCAAGAAAGTAGCCAACTTTTTCCAGATC
AAAATGGAAATGCCTACAGACAGTGGGACCTGCCTGATGGACTCGGATGACCCCAGAGCAGGAGAGTCTG
GTGACCAGACCACAGAAAAAGAAGTCATCTGCCCCTGGGAGAGCCTGGCGGAAGGGAAGGCGGGCTGA

Translation (675 aa):
MTIRHQGQQYRPRMAFLQKIEALVKDMQNPETGVRMHNQRVLVTSVPHAMTGGDVLQWITQRLWISNLEA
QNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPAEDTDYAIYLAKRNIKKKGILEEYE
KENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTN
PNEVKKQTVTAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLPSNPWITDDTQFWDL
NAKLVEIPTKMRVERWAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEACEDLKYGDQSKVKEKAEEI
YKLFLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP
QETTKRSSTLPFMRRHLRSSPSPVILRQLEEEEKAREAANTVDITQPGQHLAPSPHLAVYTGTCVPPSPS
SPFSPSCRSPRKPFASPSRFIRRPSIAICPSPSRVALEGSSGLEPKGEASWSGANSGPSVTENREPSADH
SRPQPRAPPKARAALSLGRFLRRGCLASPVFARLSPKCPSVSHGKVQPLGDMGQQLPRLKPKKVANFFQI
KMEMPTDSGTCLMDSDDPRAGESGDQTTEKEVICPWESLAEGKAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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