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Report for CCDS25262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25262.1 Public Mus musculus 11 Eme1 23 108 98 CCDS HistoryNCBI Gene:268465Re-query CCDS DB by CCDS ID:25262.1Re-query CCDS DB by GeneID:268465See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039949.4 ENSMUSP00000036361.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039949.4Link to Ensembl Protein Viewer:ENSMUSP00000036361.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039949Re-query CCDS DB by Protein ID:ENSMUSP00000036361
Original member Current member NCBI NM_177752.5 NP_808420.1 Accepted alive Link to Nucleotide Sequence:NM_177752.5Link to Protein Sequence:NP_808420.1Re-query CCDS DB by Nucleotide ID:NM_177752Re-query CCDS DB by Protein ID:NP_808420Link to BLAST:NP_808420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808420.1 570 Q8BJW7 570 100% 0 0

Chromosomal Locations for CCDS 25262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94645429 94645605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94645816 94646005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94647291 94647406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94647628 94647748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94647944 94648062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94648143 94648229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94650008 94650138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94650223 94650994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGCTCTAAGAAGGTTATCCCTGTCTCGCCTCTCCACGGAGAGTGATTCTGAGGACCTGCCCACATTTG
CCTTTTTGAAGAAGGAACCATCTTCAACCAACAGGAAGCCACCTCAGAGGGCGAAGAACATAGTGGTTGT
CACCTCAGATTCTGAAGCCTCCTGTCCTCCATCACCAGGCCTCAAAGGTCCACCATGTGTCCCCAGTGCA
GCTGGAGCTCCCCCACAAGCAGGGCCAGTCAGAGTGCTAAGCAGTAGCAGTGAGGACGAAGATGTATTTG
TCCCCCTAGCTGAGAGGATCACATGTAAGCTTTTGACGAGCAAGCAGCTGTGCCCTGAGCTCTCTAGCTC
CTCACTTAAAACAGGTTTGGATGGCCAAAATAATGCCAGCGCACCATGTGACTGGAAAAGGCAACCATGG
CCAAAGATTCCCGATGTTCCCCTCCACGGTGCCTTAGAGAAGAGTGCTGCAAATGATGAGGACTCTCTCT
TAGACGATCAGTGTCGTCAGCTTCCAACCTACCAGGCTACCTGCAGGGAGCTGGCAGTCTCCAAAACAAA
TTCCGACCGACCTCTACCCAAGAAGAGAACCAAGCATATTCAGACGGTCCAGAGCGGAGGCTCTCAGGGA
TGCTGGCGACCGGGACAGGCAAGCAGGAAGGAAAACACCCCGAGGCAGCATGAAAGAAAAAAGAAGGCAG
AGATGATCAAGAGGCTCAAAGCCCAGAGGCCAGAGGAATGCCTGAAGCACATCGTGGTGGTGCTGGATCC
AGTGCTTTTACAGATGGAAGGTGGGGGCCAGCTCCTGGGAGCGCTGCAGGCCATGGAGTGCAGCTGTGTG
ATTGAAGTCCAGGCCATACCTCGAAGCATCACTTGGAGGAGGAGGAGGACAGAGCTGGTAGAGGATGGAG
ATGACTGGATGGAAGAGCCAACAATCCTGGTGTTGGTCCTGGCAGAGGTCTTCATGTCCATGGCCTACAA
CTTAAAGCAGGCAAGTCCTAGCAGCACCGAGAAAGGGAAGGAGACCCTTCGGAGCTTTGTAACTGATGTC
ACAGCAAAGACGGGGAAAGCATTGTCACTGGTGATTGTGGACCAGGAGAAATGCTTCAGGCCTCAGAATC
CCCCGAGGAGAAGGAAATCAGGAATGGCAAATAAACAGGCCAAAGCGAAGCATCAGCAGAGGCAAGAGTC
TAGCACGGGACTCATGGTGTCCAGGGCAGACATGGAGAAGGCACTGGTGGATCTGCAGCTTTATACAGAA
GCCCAGGCGTGGATGGTGCAGAGCTGGAAGGAGCTGGCGGACTTCACCTGTGCATTTACAAAGGCTGTGG
CTGAAGCACCCTTCAAGAAGCTCCGGGATCAAGTCACCTTTTCCTTCTTCCTGGAGAAAGACTGGGCTGG
AGGGATGAAAGTGGACCAGTCCGGCAGGGGACTGGCACTGATCTGGAGGCGGCAGATCCAGCAGCTGAAC
CGAGTCAGCTCGGAGATGGCCAGTGCTATTGTGGACGCCTATCCCTCACCACAGCTCCTGGTGCAGGCTT
ATCAGCGGTGTTTCTCTGAGCAAGAACGTCAGAATTTGCTGGCTGACATACAAGTGCGACGTGGGGAAGG
TGTGACAGCCACCTCCCGCCGTGTTGGGCCAGAATTATCCAGGCGGATCTACCTTCAAATGACCACAGCG
CAACCAGATCTCATCTTAGACAGTGTTGACTGA

Translation (570 aa):
MALRRLSLSRLSTESDSEDLPTFAFLKKEPSSTNRKPPQRAKNIVVVTSDSEASCPPSPGLKGPPCVPSA
AGAPPQAGPVRVLSSSSEDEDVFVPLAERITCKLLTSKQLCPELSSSSLKTGLDGQNNASAPCDWKRQPW
PKIPDVPLHGALEKSAANDEDSLLDDQCRQLPTYQATCRELAVSKTNSDRPLPKKRTKHIQTVQSGGSQG
CWRPGQASRKENTPRQHERKKKAEMIKRLKAQRPEECLKHIVVVLDPVLLQMEGGGQLLGALQAMECSCV
IEVQAIPRSITWRRRRTELVEDGDDWMEEPTILVLVLAEVFMSMAYNLKQASPSSTEKGKETLRSFVTDV
TAKTGKALSLVIVDQEKCFRPQNPPRRRKSGMANKQAKAKHQQRQESSTGLMVSRADMEKALVDLQLYTE
AQAWMVQSWKELADFTCAFTKAVAEAPFKKLRDQVTFSFFLEKDWAGGMKVDQSGRGLALIWRRQIQQLN
RVSSEMASAIVDAYPSPQLLVQAYQRCFSEQERQNLLADIQVRRGEGVTATSRRVGPELSRRIYLQMTTA
QPDLILDSVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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