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Report for CCDS23980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23980.1 Public Mus musculus 10 Cimap1d 23 108 98 CCDS HistoryNCBI Gene:382384Re-query CCDS DB by CCDS ID:23980.1Re-query CCDS DB by GeneID:382384See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095464.2 ENSMUSP00000093117.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095464.2Link to Ensembl Protein Viewer:ENSMUSP00000093117.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095464Re-query CCDS DB by Protein ID:ENSMUSP00000093117
Original member Current member NCBI NM_001033473.2 NP_001028645.1 Accepted alive Link to Nucleotide Sequence:NM_001033473.2Link to Protein Sequence:NP_001028645.1Re-query CCDS DB by Nucleotide ID:NM_001033473Re-query CCDS DB by Protein ID:NP_001028645Link to BLAST:NP_001028645.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028645.1 277 Q3TZ65 277 100% 0 0

Chromosomal Locations for CCDS 23980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79639895 79640379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79642580 79642693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79644614 79644721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79645567 79645693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGGGACCCTCAGCTGCGACCCAGAGGCTAGGCTGACCACAGTACCCCTGGCCCGGCGGGTGGCTGATG
GACACATTCCGGAGACCGGGCTGAGAAAATCCTGTGGAATTGCCACCTTGGAGAATGGCTCCGGACCTGG
CTTGTATGTTCTTCCGTCCACCGTTGGCTATGTCAATCACGATTGTACCAAGGCAGCCAGTCCTGCCTAC
TCCCTCGCTCGGAGGCCCAGTGAAGCACCTCTCCAGGATTCCAGCCCAGGACCTGTCTACTTCTTGGACC
CGAAAGTTACTCGCTTTGGCCGTAGCTGTCCCCCTGCCTACTCCATGCAGGGCCGGGCCAAGGTCAGAGG
TCTGGAGGTGACACCAGGACCTGGGGCCTACAGCCCAGAGAAGGCACCCCCAGTACGCCAGCGGAATGCC
CCAGCTTTCACTCTGGGCTCTCGCCTCCGACAGAAGCCTCCAGACACCTCTGTTCCTGCCCCCAATGCCT
ACACCATGCCACCCCTCTGGGGATCGCAGATCTTTATCAAACCCAGCAGTCCCAGCTACACAGTTGTGGG
CCGCACACCCCCTGCACGTCCCCCTCAGGATCCTTCAGAGATTCCAGGCCCTGGGCAGTATGAGAGTCCG
GACCCCAACACCTACCGGCAGCGTAGGCCGGCCTTCAGCATACTGGGGAGACCTCGGACACCACGGCCCC
TGGAGGACACACCTGGTCCTGGTACCCACAACCCAGAACAGGTCACTGTTAACCGGGCCCGGGCCCCGGC
ATATACCATGGGCATCCGTCACTCAAAGCGGGCATCCACCATGGTAGGGGACACCAAATGCTGA

Translation (277 aa):
MGTLSCDPEARLTTVPLARRVADGHIPETGLRKSCGIATLENGSGPGLYVLPSTVGYVNHDCTKAASPAY
SLARRPSEAPLQDSSPGPVYFLDPKVTRFGRSCPPAYSMQGRAKVRGLEVTPGPGAYSPEKAPPVRQRNA
PAFTLGSRLRQKPPDTSVPAPNAYTMPPLWGSQIFIKPSSPSYTVVGRTPPARPPQDPSEIPGPGQYESP
DPNTYRQRRPAFSILGRPRTPRPLEDTPGPGTHNPEQVTVNRARAPAYTMGIRHSKRASTMVGDTKC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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