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Report for CCDS23889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23889.1 Public Mus musculus 10 Srgn 23 108 98 CCDS HistoryNCBI Gene:19073Re-query CCDS DB by CCDS ID:23889.1Re-query CCDS DB by GeneID:19073See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020271.12 ENSMUSP00000020271.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020271.12Link to Ensembl Protein Viewer:ENSMUSP00000020271.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020271Re-query CCDS DB by Protein ID:ENSMUSP00000020271
Original member Current member EBI ENSMUST00000162161.1 ENSMUSP00000125533.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162161.1Link to Ensembl Protein Viewer:ENSMUSP00000125533.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162161Re-query CCDS DB by Protein ID:ENSMUSP00000125533
Original member Current member EBI ENSMUST00000160987.7 ENSMUSP00000125622.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160987.7Link to Ensembl Protein Viewer:ENSMUSP00000125622.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160987Re-query CCDS DB by Protein ID:ENSMUSP00000125622
Original member NCBI NM_001358965.1 NP_001345894.1 Updated not alive Link to Nucleotide Sequence:NM_001358965.1Link to Protein Sequence:NP_001345894.1Re-query CCDS DB by Nucleotide ID:NM_001358965Re-query CCDS DB by Protein ID:NP_001345894
Current member NCBI NM_001358965.2 NP_001345894.1 Accepted alive Link to Nucleotide Sequence:NM_001358965.2Link to Protein Sequence:NP_001345894.1Re-query CCDS DB by Nucleotide ID:NM_001358965Re-query CCDS DB by Protein ID:NP_001345894Link to BLAST:NP_001345894.1
Original member NCBI NM_011157.3 NP_035287.1 Updated not alive Link to Nucleotide Sequence:NM_011157.3Link to Protein Sequence:NP_035287.1Re-query CCDS DB by Nucleotide ID:NM_011157Re-query CCDS DB by Protein ID:NP_035287
Current member NCBI NM_011157.4 NP_035287.1 Accepted alive Link to Nucleotide Sequence:NM_011157.4Link to Protein Sequence:NP_035287.1Re-query CCDS DB by Nucleotide ID:NM_011157Re-query CCDS DB by Protein ID:NP_035287Link to BLAST:NP_035287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345894.1 152 P13609 152 100% 0 0
NP_035287.1 152 P13609 152 100% 0 0

Chromosomal Locations for CCDS 23889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62494866 62495106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62497779 62497923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62507642 62507714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGCAGGTTCCCGTCGGCAGCAGGCTTGTCCTGGCTCTCGCCTTCGTCCTGGTTTGGGGATCTTCAGTGC
AAGGTTATCCTGCTCGGAGAGCCAGGTACCAGTGGGTCCGCTGCAAACCGAATGGCTTTTTTGCGAACTG
CATCGAGGAGAAGGGACCACAGTTTGACCTAATAGATGAATCCAATAACATCGGCCCTCCCATGAATAAT
CCTGTTTTGATGGAAGGACCCTCAAAAGATTTCATCTCCAATTATGATGACTATGGGTCAGGTTCGGGCT
CCGGCTCTGGCTCCGGCTCTGGCTCGGGTTCCGGCTCCGGAAGTGGCTTCCTAGGTGACATGGAATGGGA
ATACCAGCCAACAGATGAAAGCAATATTGTCTATTTCAACTATAAGCCTTTTGACAGGATTCTCACTGAG
CAAAACCAAGACCAACCAGAAGACGATTTTATTATATGA

Translation (152 aa):
MQVPVGSRLVLALAFVLVWGSSVQGYPARRARYQWVRCKPNGFFANCIEEKGPQFDLIDESNNIGPPMNN
PVLMEGPSKDFISNYDDYGSGSGSGSGSGSGSGSGSGSGFLGDMEWEYQPTDESNIVYFNYKPFDRILTE
QNQDQPEDDFII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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