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Report for CCDS23462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23462.1 Public Mus musculus 9 Mrpl3 23 108 98 CCDS HistoryNCBI Gene:94062Re-query CCDS DB by CCDS ID:23462.1Re-query CCDS DB by GeneID:94062See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035177.14 ENSMUSP00000035177.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035177.14Link to Ensembl Protein Viewer:ENSMUSP00000035177.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035177Re-query CCDS DB by Protein ID:ENSMUSP00000035177
Original member Current member NCBI NM_053159.4 NP_444389.2 Accepted alive Link to Nucleotide Sequence:NM_053159.4Link to Protein Sequence:NP_444389.2Re-query CCDS DB by Nucleotide ID:NM_053159Re-query CCDS DB by Protein ID:NP_444389Link to BLAST:NP_444389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444389.2 348 Q99N95 348 100% 0 0

Chromosomal Locations for CCDS 23462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 105053421 105053512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105054421 105054605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105055595 105055686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105057025 105057123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105061899 105061998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105064064 105064124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105071376 105071484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105073775 105073852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105075162 105075239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105076993 105077145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGCCGGGTTGGAGGCTGCTGGCGCAGGCTGGCGCCCGGGTGCTGGGCTGTGGCGCCAGAGGCCTAGGTG
CTGACCCCGGCTTAGAGAGAAGAAAGAATATCTTGTTCTTTGTTAGAAATCTCCACAGCAAGAGTAGTAC
TTGGTGGGATGAACATCTTTCTGAAGAAAATCTCTCCTTTGTTAAGCAACTGGTCTCCGATGAAAATAAA
ACCCAGCTGACAAGTAAACTGAATCCCTTGAAAGATGAGCCGTGGCCTTTACATCCCTGGGAACCAGGTT
CTTTCAGAGTTGGCCTCATCGCCCTGAAGCTAGGCATGATGCCTTTATGGACCAAGGATGGTCAAAAGCA
TGCAGTCACATTACTACAGGTACAAGACTGTCATGTGTTAAAATACACTCCCAAGGAAGACCATAATGGA
AAAATCGCAGCCCTGACAGTGGGCGGGAAAACCGTGTCACGCTTCTATAAACCTGACTCTAGATTGGAAT
TTTACCGAGATCTTGGACTGCCACCAAAACAGATACATAAAATCTTTCATGTGACAGATAACGCTGTAAT
TAAGCCAGGGACCCCTCTTTATGCAGCTCACTTTCGCCCTGGACAGTATGTGGATGTCACAGCCAAAACT
ATTGGTAAAGGTTTTCAGGGCGTCATGAAAAGATGGGGATTTAAAGGCCAACCTGCTTCTCATGGTCAAA
CAAAGACCCACAGGAGACCTGGCGCTATCTCAACTGGGGATATTGCCAGAGTCTGGCCTGGAACTAAAAT
GCCCGGGCGAATGGGAAACCAAAACAGGACAGTGTATGGACTGAAAGTGTGGAGAGTGAACACCAAGCAC
AACATAATCTATGTCAATGGCTCTGTGCCTGGACATAAAAATTGCTTAGTAAAGATCAAAGACTCTACAC
TGCCTGCATACAAGGATTCCTGCAAGAACCTGCCTTTCCCCACCTACTTTCCTGATGGAGATGAAGAAGA
ACTTCCAGAAGATTTGTTTGACGAGAGCGTGTGGCAGCCCAGTGAACCTTCCATCACCTTTGCCTGA

Translation (348 aa):
MPGWRLLAQAGARVLGCGARGLGADPGLERRKNILFFVRNLHSKSSTWWDEHLSEENLSFVKQLVSDENK
TQLTSKLNPLKDEPWPLHPWEPGSFRVGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHNG
KIAALTVGGKTVSRFYKPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKT
IGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTGDIARVWPGTKMPGRMGNQNRTVYGLKVWRVNTKH
NIIYVNGSVPGHKNCLVKIKDSTLPAYKDSCKNLPFPTYFPDGDEEELPEDLFDESVWQPSEPSITFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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