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Report for CCDS23449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23449.1 Public Mus musculus 9 Rab6b 23 108 98 CCDS HistoryNCBI Gene:270192Re-query CCDS DB by CCDS ID:23449.1Re-query CCDS DB by GeneID:270192See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035155.7 ENSMUSP00000035155.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035155.7Link to Ensembl Protein Viewer:ENSMUSP00000035155.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035155Re-query CCDS DB by Protein ID:ENSMUSP00000035155
Original member Current member NCBI NM_173781.4 NP_776142.1 Accepted alive Link to Nucleotide Sequence:NM_173781.4Link to Protein Sequence:NP_776142.1Re-query CCDS DB by Nucleotide ID:NM_173781Re-query CCDS DB by Protein ID:NP_776142Link to BLAST:NP_776142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776142.1 208 P61294 208 100% 0 0

Chromosomal Locations for CCDS 23449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103112157 103112226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103140382 103140440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103160820 103160873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103161064 103161169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103162542 103162653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103163810 103163903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103167106 103167172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103181182 103181246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGTCCGCAGGGGGAGATTTTGGGAACCCGCTGCGAAAATTCAAGTTGGTTTTCCTAGGGGAGCAGAGCG
TCGGGAAGACGTCTCTGATCACGAGGTTCATGTATGACAGCTTCGACAACACCTACCAGGCAACCATCGG
GATTGACTTCTTGTCAAAAACCATGTACTTGGAAGACCGTACGGTTCGACTGCAGCTCTGGGACACTGCT
GGGCAAGAGAGGTTCCGCAGCCTGATCCCCAGCTACATCCGAGACTCCACGGTGGCTGTGGTGGTATATG
ACATTACTAATCTCAACTCCTTCCAGCAGACTTCTAAATGGATTGATGACGTCAGGACGGAGAGGGGCAG
TGACGTGATCATCATGCTTGTGGGTAACAAGACGGATCTGGCTGATAAGAGGCAGATAACCATCGAGGAA
GGAGAACAGCGGGCCAAAGAACTGAGCGTCATGTTCATCGAGACCAGCGCGAAGACTGGCTACAACGTGA
AGCAGCTCTTCCGACGTGTGGCGTCAGCTCTGCCCGGCATGGAGAATGTCCAGGAGAAGAGCAAAGAAGG
GATGATTGACATCAAGCTGGACAAGCCTCAGGAGCCCCCGGCCAGCGAGGGCGGCTGCTCCTGTTAA

Translation (208 aa):
MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
GQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEE
GEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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