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Report for CCDS22822.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22822.2 Public Mus musculus 9 Kdm4d 23 108 98 CCDS HistoryNCBI Gene:244694Re-query CCDS DB by CCDS ID:22822.2Re-query CCDS DB by GeneID:244694See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22822.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058796.6 ENSMUSP00000061632.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058796.6Link to Ensembl Protein Viewer:ENSMUSP00000061632.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058796Re-query CCDS DB by Protein ID:ENSMUSP00000061632
Original member NCBI NM_173433.2 NP_775609.2 Updated not alive Link to Nucleotide Sequence:NM_173433.2Link to Protein Sequence:NP_775609.2Re-query CCDS DB by Nucleotide ID:NM_173433Re-query CCDS DB by Protein ID:NP_775609
Current member NCBI NM_173433.3 NP_775609.2 Accepted alive Link to Nucleotide Sequence:NM_173433.3Link to Protein Sequence:NP_775609.2Re-query CCDS DB by Nucleotide ID:NM_173433Re-query CCDS DB by Protein ID:NP_775609Link to BLAST:NP_775609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775609.2 510 Q3U2K5 510 100% 0 0

Chromosomal Locations for CCDS 22822.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 14463028 14464560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGAAGACGAAGTCCACATGTGCTCAGAATCCAAATTGCAGCATAATGATATTTCGTCCAACCAAAGAAG
AGTTTAATGATTTTGACAAATACATTGCTTACATGGAGTCCCAAGGGGCACACCGAGCTGGACTGGCCAA
GGTCATCCCACCAAAAGAATGGAGGGCCAGGCAGTCTTATGACAATATCAGCAACATCTTAATAGCAACT
CCCCTGCAGCAAGTGGTCTCTGGGCAGGCAGGCGTGTTCACCCAATACCATAAGAAGAAGAAAGGCATGA
CAGTGGGGGAGTACCGTGAGCTGGCCAACAGCAAAAAGTACCAGACCCCGCCACACCTGGATTTTGAAGA
TTTGGAGCGAAAATACTGGAAGAATCGCCTGTATGAGTCACCGATTTATGGTGCTGACGTCAGCGGCTCC
CTGTTTGATGGGAAGACTCAACAGTGGAATGTGGGTCACCTGGGAACAATTCAAGACCTATTGGAACAGG
AATGTGGCATAGTGATTGAGGGCGTCAACACGCCCTACCTGTACTTTGGCATGTGGAAGACCACCTTTGC
GTGGCACACGGAGGACATGGACCTGTACAGTATCAACTACCTACACTTTGGGCAGCCCAAGACCTGGTAT
GCTGTGCCCCCTGAGCATGGCAGGCGCCTGGAGCGCCTGGCCAGGGAACTCTTCCCTGGCAGCTCCCAGG
GCTGCCAGGCCTTCCTGAGGCACAAGGTGGCGCTCATCTCGCCCACTGTGCTTAAGGAGAATGGCATCCC
CTTTGGTCGCATCACCCAGGAGGCTGGGGAGTTCATGGTCACCTTTCCCTATGGCTACCACGCGGGCTTC
AACCATGGCTTCAACTGCGCAGAGGCCATCAATTTTGCCACCCCAAGGTGGATTGACTATGGCAAGGTGG
CATCTCAGTGCAGCTGTGGGGAGGCCAGGGTGAGCTTCTCCATGGACGCCTTTGTGAGGATCTTGCAGCC
TGAGCGATATGAACTGTGGAAACGTGGCCAAGATCAGGCAGTTGTGGACCACACAGAGACTATGGTGTCT
ACCAGTCAGGAGCTCACCACCCGGCGGGTGACCAAAGCACCAAGAAAAACTTGGGGCTTGAAGCGTCTCC
GGCTTCGCCAGGTCTCACGATCTCTTCTGCCTATAGCCACGGTAAGTAACGTTCCTTGCAACATGCAGGT
GTGCCACACCTCCAGGCAACCATCAGATGTGAAAGGTGATGATGTCCAGAAGTCTGACTCAGCCAGAGCC
TCACCACATCCTCTGAGTCTGCCTTCTTCTGGTCACATGTCAACTAGAAGATGTAGTCTTGGTCGTCGTC
CTTGTGAACTAGGAGCTCAGGAGTCCTCCAATGGAGCTCCAGTCAAGAGGCAACTTCCAGCAGGCAGAGA
TGACACAAGCCCCAGTCCAGAGCTTCAGCCCCAGGCTGTGAGTGGAGACTTAATAGTCGACTCAGGACTT
GTGAACCCTGGCCCACAGCATCTTATGACAGCTTCTGAAGGGGGATTGACCTCCGACCCCTAA

Translation (510 aa):
MKTKSTCAQNPNCSIMIFRPTKEEFNDFDKYIAYMESQGAHRAGLAKVIPPKEWRARQSYDNISNILIAT
PLQQVVSGQAGVFTQYHKKKKGMTVGEYRELANSKKYQTPPHLDFEDLERKYWKNRLYESPIYGADVSGS
LFDGKTQQWNVGHLGTIQDLLEQECGIVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGQPKTWY
AVPPEHGRRLERLARELFPGSSQGCQAFLRHKVALISPTVLKENGIPFGRITQEAGEFMVTFPYGYHAGF
NHGFNCAEAINFATPRWIDYGKVASQCSCGEARVSFSMDAFVRILQPERYELWKRGQDQAVVDHTETMVS
TSQELTTRRVTKAPRKTWGLKRLRLRQVSRSLLPIATVSNVPCNMQVCHTSRQPSDVKGDDVQKSDSARA
SPHPLSLPSSGHMSTRRCSLGRRPCELGAQESSNGAPVKRQLPAGRDDTSPSPELQPQAVSGDLIVDSGL
VNPGPQHLMTASEGGLTSDP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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