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Report for CCDS22815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22815.1 Public Mus musculus 9 Trpc6 23 108 98 CCDS HistoryNCBI Gene:22068Re-query CCDS DB by CCDS ID:22815.1Re-query CCDS DB by GeneID:22068See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050433.7 ENSMUSP00000057965.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050433.7Link to Ensembl Protein Viewer:ENSMUSP00000057965.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050433Re-query CCDS DB by Protein ID:ENSMUSP00000057965
Original member NCBI NM_013838.2 NP_038866.2 Updated not alive Link to Nucleotide Sequence:NM_013838.2Link to Protein Sequence:NP_038866.2Re-query CCDS DB by Nucleotide ID:NM_013838Re-query CCDS DB by Protein ID:NP_038866
Current member NCBI NM_013838.3 NP_038866.2 Accepted alive Link to Nucleotide Sequence:NM_013838.3Link to Protein Sequence:NP_038866.2Re-query CCDS DB by Nucleotide ID:NM_013838Re-query CCDS DB by Protein ID:NP_038866Link to BLAST:NP_038866.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038866.2 930 Q61143 930 100% 0 0

Chromosomal Locations for CCDS 22815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 8544432 8544598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8609700 8610474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8626593 8626775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8634047 8634211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8643506 8643722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8649298 8649531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8652936 8653200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8655177 8655372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8656542 8656745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8658303 8658377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8677924 8678007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8679468 8679543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 8680414 8680565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGAGCCAGAGCCCGAGGTTCGTGACCCGGAGGGGCGGCTCTCTAAAGGCTGCCCCTGGAGCCGGCACCC
GGCGCAACGAGAGCCAGGACTATTTGCTGATGGACGAGCTGGGAGACGACGGCTACCCGCAGCTCCCGCT
GCCACCGTATGGCTACTACCCCAGCTTCCGGGGTAATGAAAACAGACTGACTCACCGGCGGCAGACGATT
CTTCGTGAGAAGGGAAGAAGGTTAGCTAATCGAGGACCAGCATACATGTTTAATGATCATTCAACAAGCC
TGTCTATTGAGGAAGAACGCTTTCTAGATGCAGCTGAATATGGCAACATCCCAGTGGTGCGGAAGATGCT
AGAAGAGTGTCATTCCCTCAATGTTAACTGTGTGGATTACATGGGCCAGAATGCCCTACAGCTGGCTGTG
GCCAATGAGCACTTGGAAATCACAGAGCTGCTACTCAAGAAGGAAAACTTGTCTCGAGTTGGGGATGCTT
TACTTTTAGCCATTAGTAAAGGTTATGTACGGATTGTGGAGGCAATCCTCAACCATCCAGCTTTTGCTGA
AGGCAAAAGGTTAGCGACAAGCCCCAGCCAGTCTGAACTTCAGCAAGATGACTTTTATGCCTATGATGAA
GATGGGACGCGGTTCTCCCATGATGTGACCCCAATCATTCTCGCTGCACATTGCCAGGAATATGAAATTG
TGCATACCCTCCTGAGAAAGGGTGCCCGGATTGAGCGGCCTCATGATTACTTCTGCAAGTGTACAGAATG
CAGCCAGAAGCAGAAGCATGATTCCTTCAGCCACTCTAGATCCAGGATCAATGCATACAAAGGTCTGGCA
AGTCCAGCATACCTGTCATTGTCCAGTGAAGATCCAGTCATGACTGCTTTAGAACTTAGCAATGAGCTGG
CAGTGCTTGCCAACATTGAGAAAGAGTTCAAGAATGACTACAGGAAGCTGTCTATGCAGTGCAAGGATTT
CGTTGTTGGTCTCTTGGACCTCTGCAGAAACACAGAGGAAGTGGAGGCCATCCTGAATGGGGATGCAGAG
ACTCGCCAGCCCGGGGACTTCGGCCGTCCAAATCTCAGCCGTTTAAAACTTGCTATTAAGTATGAAGTAA
AAAAATTTGTGGCTCATCCAAACTGTCAGCAACAGCTCCTGTCCATATGGTATGAGAACCTCTCTGGTTT
ACGGCAGCAGACCATGGCAGTGAAGTTCCTCGTGGTCCTTGCTGTTGCCATTGGATTGCCCTTCCTGGCT
CTCATATACTGGTGTGCTCCTTGCAGCAAGATGGGGAAGATATTGCGAGGACCGTTCATGAAGTTTGTAG
CACACGCAGCCTCCTTCACCATTTTCCTGGGGCTGCTCGTCATGAATGCAGCTGACAGATTTGAAGGCAC
CAAGCTCCTCCCTAATGAAACCAGCACAGATAATGCAAGGCAGCTGTTCAGGATGAAAACATCCTGTTTC
TCATGGATGGAGATGCTCATTATATCCTGGGTAATAGGCATGATATGGGCTGAATGTAAAGAAATCTGGA
CTCAAGGCCCCAAAGAATACTTATTTGAGTTGTGGAATATGCTTGACTTTGGAATGCTGGCAATCTTTGC
AGCATCATTCATTGCAAGATTTATGGCGTTCTGGCATGCATCCAAAGCTCAGAGCATCATTGATGCAAAT
GATACTTTAAAGGATTTGACAAAAGTCACACTGGGGGACAACGTTAAATACTACAATCTGGCCAGGATAA
AGTGGGACCCTACTGATCCTCAGATCATCTCTGAAGGTCTTTATGCAATCGCTGTGGTTTTAAGTTTCTC
CAGAATAGCTTACATTTTACCAGCAAATGAAAGCTTTGGACCTCTGCAGATTTCACTTGGAAGAACAGTG
AAAGATATCTTCAAATTCATGGTCATATTCATCATGGTGTTTGTAGCCTTTATGATTGGAATGTTCAACC
TTTACTCCTACTACATTGGCGCAAAACAGAATGAAGCATTCACAACAGTTGAGGAAAGTTTTAAGACACT
GTTCTGGGCTATCTTTGGTCTTTCTGAAGTGAAGTCAGTGGTCATTAACTACAATCACAAGTTCATTGAA
AACATCGGCTACGTTCTGTATGGTGTCTATAATGTCACAATGGTCATTGTTTTGCTAAATATGTTAATTG
CGATGATCAATAGTTCATTCCAGGAAATTGAGGATGATGCGGACGTGGAGTGGAAGTTTGCAAGGGCCAA
ATTGTGGTTTTCCTACTTTGAGGAGGGGAGAACACTTCCTGTCCCCTTCAATCTTGTACCAAGTCCAAAA
TCCTTGCTTTATCTCCTATTGAAATTTAAGAAATGGATGTGTGAGCTCATCCAGGGTCAAAAGCAAGGCT
TCCAAGAAGATGCAGAGATGAACAAGAGAAATGAAGAAAAGAAATTTGGAATTTCAGGAAGTCACGAAGA
CCTTTCAAAATTTTCACTTGACAAAAATCAGTTGGCACACAACAAACAATCAAGTACAAGGAGCTCAGAA
GATTATCATTTAAATAGTTTCAGTAACCCTCCAAGACAATATCAGAAAATCATGAAGAGACTCATTAAAA
GATATGTATTGCAGGCCCAGATTGATAAGGAGAGCGATGAGGTGAATGAAGGGGAATTGAAGGAAATTAA
GCAAGACATCTCAAGTCTCCGTTATGAACTCCTTGAAGAGAAATCACAGAACACAGAAGACCTAGCAGAG
CTCATTAGAAAACTCGGGGAGAGACTGTCGTTAGAGCCAAAGCTGGAGGAAAGCCGCAGATAG

Translation (930 aa):
MSQSPRFVTRRGGSLKAAPGAGTRRNESQDYLLMDELGDDGYPQLPLPPYGYYPSFRGNENRLTHRRQTI
LREKGRRLANRGPAYMFNDHSTSLSIEEERFLDAAEYGNIPVVRKMLEECHSLNVNCVDYMGQNALQLAV
ANEHLEITELLLKKENLSRVGDALLLAISKGYVRIVEAILNHPAFAEGKRLATSPSQSELQQDDFYAYDE
DGTRFSHDVTPIILAAHCQEYEIVHTLLRKGARIERPHDYFCKCTECSQKQKHDSFSHSRSRINAYKGLA
SPAYLSLSSEDPVMTALELSNELAVLANIEKEFKNDYRKLSMQCKDFVVGLLDLCRNTEEVEAILNGDAE
TRQPGDFGRPNLSRLKLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLAVAIGLPFLA
LIYWCAPCSKMGKILRGPFMKFVAHAASFTIFLGLLVMNAADRFEGTKLLPNETSTDNARQLFRMKTSCF
SWMEMLIISWVIGMIWAECKEIWTQGPKEYLFELWNMLDFGMLAIFAASFIARFMAFWHASKAQSIIDAN
DTLKDLTKVTLGDNVKYYNLARIKWDPTDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTV
KDIFKFMVIFIMVFVAFMIGMFNLYSYYIGAKQNEAFTTVEESFKTLFWAIFGLSEVKSVVINYNHKFIE
NIGYVLYGVYNVTMVIVLLNMLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPK
SLLYLLLKFKKWMCELIQGQKQGFQEDAEMNKRNEEKKFGISGSHEDLSKFSLDKNQLAHNKQSSTRSSE
DYHLNSFSNPPRQYQKIMKRLIKRYVLQAQIDKESDEVNEGELKEIKQDISSLRYELLEEKSQNTEDLAE
LIRKLGERLSLEPKLEESRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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