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Report for CCDS2270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2270.1 Public Homo sapiens 2 HOXD3 24 110 108 CCDS HistoryNCBI Gene:3232Re-query CCDS DB by CCDS ID:2270.1Re-query CCDS DB by GeneID:3232See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249440.4 ENSP00000249440.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000249440.4Link to Ensembl Protein Viewer:ENSP00000249440.2Re-query CCDS DB by Nucleotide ID:ENST00000249440Re-query CCDS DB by Protein ID:ENSP00000249440
Original member Current member EBI ENST00000410016.5 ENSP00000386498.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410016.5Link to Ensembl Protein Viewer:ENSP00000386498.1Re-query CCDS DB by Nucleotide ID:ENST00000410016Re-query CCDS DB by Protein ID:ENSP00000386498
Original member Current member EBI ENST00000683222.1 ENSP00000507129.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683222.1Link to Ensembl Protein Viewer:ENSP00000507129.1Re-query CCDS DB by Nucleotide ID:ENST00000683222Re-query CCDS DB by Protein ID:ENSP00000507129
Original member Current member NCBI NM_006898.5 NP_008829.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006898.5Link to Protein Sequence:NP_008829.3Re-query CCDS DB by Nucleotide ID:NM_006898Re-query CCDS DB by Protein ID:NP_008829Link to BLAST:NP_008829.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008829.3 432 P31249 432 100% 0 0

Chromosomal Locations for CCDS 2270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 176169115 176169655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176171517 176172274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGTTATTTGAGCAGGGTCAGCAGGCCCTGGAGCTTCCTGAGTGCACAATGCAGAAGGCTGCTTACTATG
AAAACCCAGGACTGTTTGGAGGCTATGGCTACAGCAAAACTACGGACACTTACGGCTACAGCACCCCCCA
CCAGCCCTACCCACCCCCTGCTGCTGCCAGCTCCCTGGACACTGACTATCCAGGTTCTGCCTGCTCCATC
CAGAGCTCTGCCCCTCTGAGAGCCCCAGCCCACAAAGGAGCTGAACTCAATGGCAGCTGCATGCGGCCGG
GCACTGGGAACAGCCAGGGTGGGGGTGGTGGCAGCCAGCCTCCTGGTCTGAACTCAGAGCAGCAGCCACC
ACAACCCCCTCCTCCACCACCGACCCTGCCCCCATCTTCACCCACCAATCCTGGAGGTGGAGTGCCTGCC
AAGAAGCCCAAAGGTGGGCCCAATGCTTCTAGCTCCTCAGCCACCATCAGCAAGCAGATCTTCCCCTGGA
TGAAAGAGTCTCGACAGAACTCCAAGCAGAAGAACAGCTGTGCCACTGCAGGAGAGAGCTGCGAGGACAA
GAGCCCGCCAGGCCCAGCATCCAAGCGGGTACGCACGGCATACACGAGCGCGCAGCTGGTGGAATTGGAA
AAGGAATTCCACTTCAACCGCTACTTGTGCCGGCCGCGCCGCGTGGAGATGGCCAACCTGCTGAATCTCA
CGGAACGCCAGATCAAGATCTGGTTCCAGAACCGGCGCATGAAGTACAAGAAGGACCAGAAGGCCAAGGG
CATCCTGCACTCGCCGGCTAGCCAGTCCCCTGAGCGCAGCCCACCGCTCGGCGGCGCCGCTGGCCACGTG
GCCTACTCCGGCCAGCTGCCGCCAGTGCCCGGCCTGGCCTACGACGCGCCCTCGCCGCCTGCTTTCGCCA
AATCACAGCCCAATATGTACGGCCTGGCCGCCTACACGGCGCCACTCAGCAGCTGCCTGCCACAACAGAA
GCGCTACGCAGCGCCGGAGTTCGAGCCCCATCCCATGGCGAGCAACGGCGGCGGCTTCGCCAGCGCCAAC
TTGCAGGGCAGCCCGGTGTACGTGGGCGGCAACTTCGTCGAGTCCATGGCGCCCGCGTCCGGGCCTGTCT
TCAACCTGGGCCACCTCTCGCACCCGTCGTCGGCCAGCGTGGACTACAGTTGCGCCGCGCAGATTCCAGG
CAACCACCACCATGGACCTTGCGACCCTCATCCCACCTACACAGATCTCTCGGCCCACCACTCGTCTCAG
GGACGACTGCCGGAGGCTCCCAAACTGACGCATCTGTAG

Translation (432 aa):
MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSI
QSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPA
KKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELE
KEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHV
AYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASAN
LQGSPVYVGGNFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
GRLPEAPKLTHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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