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Report for CCDS22676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22676.1 Public Mus musculus 8 Znrf1 23 108 98 CCDS HistoryNCBI Gene:170737Re-query CCDS DB by CCDS ID:22676.1Re-query CCDS DB by GeneID:170737See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095176.11 ENSMUSP00000092799.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095176.11Link to Ensembl Protein Viewer:ENSMUSP00000092799.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095176Re-query CCDS DB by Protein ID:ENSMUSP00000092799
Original member Current member EBI ENSMUST00000168428.7 ENSMUSP00000126684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168428.7Link to Ensembl Protein Viewer:ENSMUSP00000126684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168428Re-query CCDS DB by Protein ID:ENSMUSP00000126684
Original member Current member EBI ENSMUST00000172856.7 ENSMUSP00000133309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172856.7Link to Ensembl Protein Viewer:ENSMUSP00000133309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172856Re-query CCDS DB by Protein ID:ENSMUSP00000133309
Original member Current member EBI ENSMUST00000173506.7 ENSMUSP00000133993.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173506.7Link to Ensembl Protein Viewer:ENSMUSP00000133993.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173506Re-query CCDS DB by Protein ID:ENSMUSP00000133993
Original member NCBI NM_001168621.2 NP_001162092.1 Updated not alive Link to Nucleotide Sequence:NM_001168621.2Link to Protein Sequence:NP_001162092.1Re-query CCDS DB by Nucleotide ID:NM_001168621Re-query CCDS DB by Protein ID:NP_001162092
Current member NCBI NM_001168621.3 NP_001162092.1 Accepted alive Link to Nucleotide Sequence:NM_001168621.3Link to Protein Sequence:NP_001162092.1Re-query CCDS DB by Nucleotide ID:NM_001168621Re-query CCDS DB by Protein ID:NP_001162092Link to BLAST:NP_001162092.1
Original member NCBI NM_001363488.1 NP_001350417.1 Updated not alive Link to Nucleotide Sequence:NM_001363488.1Link to Protein Sequence:NP_001350417.1Re-query CCDS DB by Nucleotide ID:NM_001363488Re-query CCDS DB by Protein ID:NP_001350417
Current member NCBI NM_001363488.2 NP_001350417.1 Accepted alive Link to Nucleotide Sequence:NM_001363488.2Link to Protein Sequence:NP_001350417.1Re-query CCDS DB by Nucleotide ID:NM_001363488Re-query CCDS DB by Protein ID:NP_001350417Link to BLAST:NP_001350417.1
Original member NCBI NM_133206.4 NP_573469.1 Updated not alive Link to Nucleotide Sequence:NM_133206.4Link to Protein Sequence:NP_573469.1Re-query CCDS DB by Nucleotide ID:NM_133206Re-query CCDS DB by Protein ID:NP_573469
Current member NCBI NM_133206.5 NP_573469.1 Accepted alive Link to Nucleotide Sequence:NM_133206.5Link to Protein Sequence:NP_573469.1Re-query CCDS DB by Nucleotide ID:NM_133206Re-query CCDS DB by Protein ID:NP_573469Link to BLAST:NP_573469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162092.1 227 Q91V17 227 100% 0 0
NP_001350417.1 227 Q91V17 227 100% 0 0
NP_573469.1 227 Q91V17 227 100% 0 0

Chromosomal Locations for CCDS 22676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111537141 111537564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111609293 111609388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111619206 111619311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111621596 111621653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGGGGGCAAGCAGAGCACGGCGGCCCGCTCTCGGGGCCCCTTCCCGGGGGTCTCTACGGATGACAGCG
CCGTGCCGCCGCCGGGAGGGGCGCCCCACTTTGGGCACTACCGGACGGGCGGCGGGGCGATGGGGCTGCG
CAGCCGCTCGGTCAGCTCGGTGGCGGGCATGGGCATGGACCCCAGCACGGCCGGAGGGGTGCCCTTTAGT
CTCTACACCCCCGCCTCCCGCGGGACCGGCGACTCCGAGAGGGCGCCGGGCGGCGGAGGGTCCACGTCGG
ACTCCACCTATGCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGTCACCATAGAGACGGGATGCTGTA
CCTGGGCTCCCGAGCCTCGCTGGCGGATGCTCTACCTCTGCACATCGCACCCAGGTGGTTCAGCTCGCAC
AGTGGTTTCAAGTGCCCCATTTGTTCCAAGTCTGTGGCTTCCGATGAGATGGAAATGCACTTTATAATGT
GTCTGAGCAAGCCTCGCCTGTCCTACAATGATGATGTGCTGACTAAAGATGCGGGTGAGTGTGTGATCTG
CCTGGAGGAGCTGCTTCAGGGGGACACGATAGCCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCTGC
ATAGACTCATGGTTTGAAGTGAACAGATCTTGTCCAGAGCACCCTGCTGACTGA

Translation (227 aa):
MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMDPSTAGGVPFS
LYTPASRGTGDSERAPGGGGSTSDSTYAHGNGYQETGGGHHRDGMLYLGSRASLADALPLHIAPRWFSSH
SGFKCPICSKSVASDEMEMHFIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSC
IDSWFEVNRSCPEHPAD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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