NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21884.1 Public Mus musculus 7 Bckdk 23 108 98 CCDS HistoryNCBI Gene:12041Re-query CCDS DB by CCDS ID:21884.1Re-query CCDS DB by GeneID:12041See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071056.13 ENSMUSP00000070345.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071056.13Link to Ensembl Protein Viewer:ENSMUSP00000070345.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000071056Re-query CCDS DB by Protein ID:ENSMUSP00000070345
Original member Current member NCBI NM_009739.3 NP_033869.1 Accepted alive Link to Nucleotide Sequence:NM_009739.3Link to Protein Sequence:NP_033869.1Re-query CCDS DB by Nucleotide ID:NM_009739Re-query CCDS DB by Protein ID:NP_033869Link to BLAST:NP_033869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033869.1 412 O55028 412 100% 0 0

Chromosomal Locations for CCDS 21884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127904931 127905125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127905222 127905290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127905370 127905480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127905749 127905796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127905873 127905992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127906072 127906170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127906349 127906422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127907219 127907347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127907442 127907531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127907921 127908079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127908167 127908311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGATACTGACTTCAGTGCTGGGCAGCGGCCCTCGGAGCTGGTCTTCACTTTGGCCCCTCTTGGGGTCCT
CACTGTCACTCCGGGCTCGCTCAACATCAGCCACCGATACACACCATGTAGAGCTGGCCAGGGAACGCTC
CAAGACTGTCACCTCTTTTTACAACCAGTCAGCCATTGATGTGGCAGCAGAGAAGCCCTCAGTTCGCCTC
ACTCCCACCATGATGCTCTATTCCGGTCGCTCACAGGATGGCAGCCACCTTCTGAAAAGTGGCCGCTACT
TGCAGCAAGAGTTACCAGTGAGGATTGCTCACCGCATCAAGGGCTTCCGTAGCCTTCCTTTCATCATTGG
TTGCAACCCTACCATACTGCATGTGCACGAGCTATACATCCGGGCCTTCCAGAAGCTGACAGACTTCCCT
CCGATCAAGGACCAGGCAGATGAGGCCCAGTACTGCCAGCTGGTGAGACAGCTGCTAGATGACCACAAGG
ATGTGGTGACCCTGTTAGCTGAGGGTCTTCGTGAGAGCCGGAAACACATCCAGGATGAAAAGCTAGTCCG
GTACTTCTTGGATAAAACACTGACGTCAAGACTTGGGATCCGAATGCTGGCTACTCACCACTTGGCGCTA
CATGAAGACAAGCCTGATTTTGTTGGCATCATCTGTACTCGTCTGTCGCCCAAGAAGATTATCGAGAAGT
GGGTGGATTTTGCCAGACGCCTGTGTGAGCACAAGTATGGCAATGCCCCTCGAGTCCGCATCAACGGACA
TGTGGCTGCCCGGTTCCCCTTCATTCCCATGCCGCTGGACTATATCCTGCCTGAGCTGCTCAAGAATGCC
ATGAGAGCCACAATGGAGAGTCACCTAGACACTCCCTACAATGTCCCAGATGTGGTCATCACCATCGCCA
ATAATGATATTGATCTCATCATCAGGATCTCAGACCGGGGTGGAGGAATCGCTCATAAGGACCTGGATCG
GGTCATGGACTACCACTTCACCACAGCTGAGGCCAGCACCCAGGACCCCCGAATCAACCCCCTCTTCGGC
CACCTGGATATGCACAGTGGTGGCCAGTCAGGACCTATGCATGGCTTTGGCTTCGGGTTGCCCACGTCCA
GGGCATATGCAGAGTATCTTGGTGGCTCCCTGCAGCTGCAGTCCCTGCAGGGCATTGGCACGGATGTCTA
CCTACGGCTCCGCCACATTGATGGTCGGGAGGAAAGCTTCAGAATCTAA

Translation (412 aa):
MILTSVLGSGPRSWSSLWPLLGSSLSLRARSTSATDTHHVELARERSKTVTSFYNQSAIDVAAEKPSVRL
TPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFP
PIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIQDEKLVRYFLDKTLTSRLGIRMLATHHLAL
HEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNA
MRATMESHLDTPYNVPDVVITIANNDIDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRINPLFG
HLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREESFRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH