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Report for CCDS21341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21341.1 Public Mus musculus 7 Tm2d3 23 108 98 CCDS HistoryNCBI Gene:68634Re-query CCDS DB by CCDS ID:21341.1Re-query CCDS DB by GeneID:68634See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065574.8 ENSMUSP00000064967.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065574.8Link to Ensembl Protein Viewer:ENSMUSP00000064967.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000065574Re-query CCDS DB by Protein ID:ENSMUSP00000064967
Original member Current member EBI ENSMUST00000107495.4 ENSMUSP00000103119.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107495.4Link to Ensembl Protein Viewer:ENSMUSP00000103119.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107495Re-query CCDS DB by Protein ID:ENSMUSP00000103119
Original member NCBI NM_178056.3 NP_835157.1 Updated not alive Link to Nucleotide Sequence:NM_178056.3Link to Protein Sequence:NP_835157.1Re-query CCDS DB by Nucleotide ID:NM_178056Re-query CCDS DB by Protein ID:NP_835157
Current member NCBI NM_178056.4 NP_835157.1 Accepted alive Link to Nucleotide Sequence:NM_178056.4Link to Protein Sequence:NP_835157.1Re-query CCDS DB by Nucleotide ID:NM_178056Re-query CCDS DB by Protein ID:NP_835157Link to BLAST:NP_835157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835157.1 261 Q8BJ83-1 261 100% 0 0

Chromosomal Locations for CCDS 21341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 65693479 65693569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65693851 65693943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65695143 65695327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65697696 65697870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65699092 65699167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 65701593 65701758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGAGGCTGCGGCCGAGCCGCTGCGGTCTGTCCGCCACCTGTCCCGCGTGCTGCTTTTCCTGTCCCAGT
GCTACATTCTGTCGGGAGATGGATCCTTAAATTTAGAGCATTCGCAGCCGCTGGCTCAGGCAATAAAGGA
TCCGGGCCCAACACGTACATTCTCTGTAGTTCCCAGGGCAGCAGAGAATCAGCTGTTCTCTCACCTCACA
GAAAGTACTGAAATCCCTCCTTACATGACGAAGTGTCCAAGCAATGGTTTGTGTAGCAGACTTCCTGCAG
ACTGTATAGAATGTGCGACCAATGTCTCCTGCACTTACGGGAAGCCTGTCACGTTCGACTGCACAGTGAA
GCCCTCTGTTACCTGTGTCGATCAAGACCTCAAACCCCAGAGGAACTTCGTCATCAACATGACTTGCAGG
TTTTGCTGGCAGCTTCCTGAAACAGACTACGAGTGTTCAAATTCCACCACCTGCATGACCGTGGCTTGCC
CTCGGCAGCGCTATTTCGCCAACTGCACCGTGCGTGACCACATTCACTGCCTGGGCAACCGGACTTTCCC
TAAGCTGCTGTACTGCAACTGGACAGGTGGCTACAAGTGGTCGACAGCCCTGGCTCTCAGCATCACCCTT
GGGGGGTTTGGAGCCGATCGCTTCTACCTGGGCCAGTGGCGAGAAGGCCTCGGCAAGCTCTTCAGCTTTG
GCGGCCTGGGAATATGGACCCTAATCGATGTCTTGCTGATTGGAGTTGGCTATGTGGGACCAGCGGATGG
CTCTTTGTACATTTAG

Translation (261 aa):
MEAAAEPLRSVRHLSRVLLFLSQCYILSGDGSLNLEHSQPLAQAIKDPGPTRTFSVVPRAAENQLFSHLT
ESTEIPPYMTKCPSNGLCSRLPADCIECATNVSCTYGKPVTFDCTVKPSVTCVDQDLKPQRNFVINMTCR
FCWQLPETDYECSNSTTCMTVACPRQRYFANCTVRDHIHCLGNRTFPKLLYCNWTGGYKWSTALALSITL
GGFGADRFYLGQWREGLGKLFSFGGLGIWTLIDVLLIGVGYVGPADGSLYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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