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Report for CCDS20642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20642.1 Public Mus musculus 6 Cdkn1b 23 108 98 CCDS HistoryNCBI Gene:12576Re-query CCDS DB by CCDS ID:20642.1Re-query CCDS DB by GeneID:12576See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003115.8 ENSMUSP00000003115.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003115.8Link to Ensembl Protein Viewer:ENSMUSP00000003115.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003115Re-query CCDS DB by Protein ID:ENSMUSP00000003115
Original member Current member EBI ENSMUST00000067327.10 ENSMUSP00000065832.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067327.10Link to Ensembl Protein Viewer:ENSMUSP00000065832.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067327Re-query CCDS DB by Protein ID:ENSMUSP00000065832
Original member Current member EBI ENSMUST00000204807.1 ENSMUSP00000145056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204807.1Link to Ensembl Protein Viewer:ENSMUSP00000145056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204807Re-query CCDS DB by Protein ID:ENSMUSP00000145056
Original member Current member NCBI NM_009875.4 NP_034005.2 Accepted alive Link to Nucleotide Sequence:NM_009875.4Link to Protein Sequence:NP_034005.2Re-query CCDS DB by Nucleotide ID:NM_009875Re-query CCDS DB by Protein ID:NP_034005Link to BLAST:NP_034005.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034005.2 197 P46414 197 100% 0 0

Chromosomal Locations for CCDS 20642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 134920920 134921394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134921956 134922074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGTCAAACGTGAGAGTGTCTAACGGGAGCCCGAGCCTGGAGCGGATGGACGCCAGACAAGCGGAGCACC
CCAAGCCTTCCGCCTGCAGAAATCTCTTCGGCCCGGTCAATCATGAAGAACTAACCCGGGACTTGGAGAA
GCACTGCCGGGATATGGAAGAAGCGAGTCAGCGCAAGTGGAATTTCGACTTTCAGAATCATAAGCCCCTG
GAGGGCAGATACGAGTGGCAGGAGGTGGAGAGGGGCAGCTTGCCCGAGTTCTACTACAGGCCCCCGCGCC
CCCCCAAGAGCGCCTGCAAGGTGCTGGCGCAGGAGAGCCAGGATGTCAGCGGGAGCCGCCAGGCGGTGCC
TTTAATTGGGTCTCAGGCAAACTCTGAGGACCGGCATTTGGTGGACCAAATGCCTGACTCGTCAGACAAT
CCGGCTGGGTTAGCGGAGCAGTGTCCAGGGATGAGGAAGCGACCTGCTGCAGAAGATTCTTCTTCGCAAA
ACAAAAGGGCCAACAGAACAGAAGAAAATGTTTCAGACGGTTCCCCGAACGCTGGCACTGTGGAGCAGAC
GCCCAAGAAGCCCGGCCTTCGACGCCAGACGTAA

Translation (197 aa):
MSNVRVSNGSPSLERMDARQAEHPKPSACRNLFGPVNHEELTRDLEKHCRDMEEASQRKWNFDFQNHKPL
EGRYEWQEVERGSLPEFYYRPPRPPKSACKVLAQESQDVSGSRQAVPLIGSQANSEDRHLVDQMPDSSDN
PAGLAEQCPGMRKRPAAEDSSSQNKRANRTEENVSDGSPNAGTVEQTPKKPGLRRQT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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