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Report for CCDS20451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20451.1 Public Mus musculus 6 Marchf8 23 108 98 CCDS HistoryNCBI Gene:71779Re-query CCDS DB by CCDS ID:20451.1Re-query CCDS DB by GeneID:71779See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079012.12 ENSMUSP00000078024.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079012.12Link to Ensembl Protein Viewer:ENSMUSP00000078024.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079012Re-query CCDS DB by Protein ID:ENSMUSP00000078024
Original member Current member EBI ENSMUST00000101032.9 ENSMUSP00000098594.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101032.9Link to Ensembl Protein Viewer:ENSMUSP00000098594.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101032Re-query CCDS DB by Protein ID:ENSMUSP00000098594
Original member NCBI NM_001302383.1 NP_001289312.1 Updated not alive Link to Nucleotide Sequence:NM_001302383.1Link to Protein Sequence:NP_001289312.1Re-query CCDS DB by Nucleotide ID:NM_001302383Re-query CCDS DB by Protein ID:NP_001289312
Current member NCBI NM_001302383.2 NP_001289312.1 Accepted alive Link to Nucleotide Sequence:NM_001302383.2Link to Protein Sequence:NP_001289312.1Re-query CCDS DB by Nucleotide ID:NM_001302383Re-query CCDS DB by Protein ID:NP_001289312Link to BLAST:NP_001289312.1
Original member NCBI NM_001302384.1 NP_001289313.1 Updated not alive Link to Nucleotide Sequence:NM_001302384.1Link to Protein Sequence:NP_001289313.1Re-query CCDS DB by Nucleotide ID:NM_001302384Re-query CCDS DB by Protein ID:NP_001289313
Current member NCBI NM_001302384.2 NP_001289313.1 Accepted alive Link to Nucleotide Sequence:NM_001302384.2Link to Protein Sequence:NP_001289313.1Re-query CCDS DB by Nucleotide ID:NM_001302384Re-query CCDS DB by Protein ID:NP_001289313Link to BLAST:NP_001289313.1
Original member NCBI NM_027920.5 NP_082196.1 Updated not alive Link to Nucleotide Sequence:NM_027920.5Link to Protein Sequence:NP_082196.1Re-query CCDS DB by Nucleotide ID:NM_027920Re-query CCDS DB by Protein ID:NP_082196
Current member NCBI NM_027920.6 NP_082196.1 Accepted alive Link to Nucleotide Sequence:NM_027920.6Link to Protein Sequence:NP_082196.1Re-query CCDS DB by Nucleotide ID:NM_027920Re-query CCDS DB by Protein ID:NP_082196Link to BLAST:NP_082196.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289312.1 286 Q9DBD2 286 100% 0 0
NP_001289313.1 286 Q9DBD2 286 100% 0 0
NP_082196.1 286 Q9DBD2 286 100% 0 0

Chromosomal Locations for CCDS 20451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116376771 116376863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116392524 116392574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116401037 116401122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116403420 116403600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116405635 116405782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116406025 116406326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGAGCATGCCATTGCACCAGATCTCTGCCATCCCTTCTCAGGATGCCATTTCTGCTAGAGTCTACAGAA
GC
AAGACCAAAGATAAGGAGCAGAATGAGAAGACTTTGGGACATTCCATGAGTCATCCAAGCAACATTTC
T
AAGGCTGGGAGTAGTCCTCCATCCACGACGGCTCCAGTGTCTGCCTTCTCTCGCACTTCTGTCACACCA
TCC
AACCAGGACATCTGCAGGATCTGCCACTGTGAAGGGGATGACGAGAGCCCTCTGATCACCCCCTGTC
AC
TGCACAGGGAGCCTCCATTTCGTGCATCAGGCTTGCCTGCAGCAGTGGATCAAGAGTTCTGACACACG
C
TGCTGTGAACTCTGCAAGTACGAGTTCATCATGGAGACCAAGCTGAAACCTTTGAGGAAATGGGAGAAG
TTG
CAGATGACTGCCAGTGAGCGCAGGAAGATCATGTGCTCAGTGACCTTCCATGTCATTGCTATCACCT
GT
GTGGTCTGGTCCTTGTATGTGCTCATTGACCGCACAGCAGAGGAAATCAAGCAGGGTCAGGTAACAGG
A
ATCCTAGAGTGGCCTTTCTGGACGAAGCTGGTAGTTGTGGCCATCGGCTTCACTGGAGGACTTCTCTTT
ATG
TATGTTCAGTGCAAGGTGTACCTACAGTTATGGAAAAGACTCAAGGCTTACAATAGAGTGATCTATG
TT
CAGAACTGTCCAGAAACAAGTAAAAAGAATATTTTTGAAAAGTCTGCACTTACAGAGCCCACCCTTGA
A
AATAAAGAAGGACATGGAATGTGTCATTCCACCACAAATTCTTCTTGCACAGAGCCTGAAGACACTGGA
GCA
GAAATTATTAACGTCTGA


Translation (286 aa):
MSMPLHQISAIPSQDAISARVYRSKTKDKEQNEKTLGHSMSHPSNISKAGSSPPSTTAPVSAFSRTSVTP
S
NQDIC
RICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWEK
L
QMTASERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQVT
GILEWPFWTKLVVVAIGFTGGLLF
M
YVQCKVYLQLWKRLKAYNRVIYVQNCPETSKKNIFEKSALTEPTLENKEGHGMCHSTTNSSCTEPEDTG
A
EIINV




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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