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Report for CCDS20438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20438.1 Public Mus musculus 6 Timp4 23 108 98 CCDS HistoryNCBI Gene:110595Re-query CCDS DB by CCDS ID:20438.1Re-query CCDS DB by GeneID:110595See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032462.8 ENSMUSP00000032462.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032462.8Link to Ensembl Protein Viewer:ENSMUSP00000032462.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032462Re-query CCDS DB by Protein ID:ENSMUSP00000032462
Original member Current member NCBI NM_080639.4 NP_542370.3 Accepted alive Link to Nucleotide Sequence:NM_080639.4Link to Protein Sequence:NP_542370.3Re-query CCDS DB by Nucleotide ID:NM_080639Re-query CCDS DB by Protein ID:NP_542370Link to BLAST:NP_542370.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542370.3 224 Q9JHB3 224 100% 0 0

Chromosomal Locations for CCDS 20438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115246286 115246483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115247230 115247354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115249829 115249943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115250380 115250477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115251640 115251778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCCCTGGAGTCCCCTGGCTGCGCTGAGCTGGGCGCTGGTGCTGAGGCTGCTGGCTTTGCTGTGGCCCC
CTGGACGGGGTGAGGCGTGCAGCTGTGCGCCTGCGCACCCCCAGCAGCACTTCTGCCACTCGGCTCTAGT
GATACGGGCCAAAATATCCAGTGAGAAGGTAGTCCCTGCCAGCAAAGACCCTGCTGACACTCAAAAACTG
ATCCGGTATGAAATCAAACAGATAAAGATGTTTAAAGGGTTCGAGAAGGCCAAGGATATTCAGTATGTCT
ACACGCCATTTGACTCTTCCCTCTGTGGTGTGAAGCTAGAAACCAACAGTCACAAGCAGTATCTTTTGAC
TGGCCAGATTCTCAGTGATGGAAAAGTCTTCATCCATCTGTGCAACTACATTGAGCCCTGGGAGGACCTG
TCCTTGGTGCAGAGGGAGAGCCTGAATCATCACTACCACCAGAACTGTGGCTGCCAAATCACCACTTGCT
ATGCAGTGCCATGTACCATCTCAGCCCCCAATGAGTGTCTCTGGACGGACTGGCTGCTGGAACGGAAGCT
CTATGGGTACCAGGCCCAGCACTATGTCTGCATGAAGCATGTTGATGGCATCTGCAGCTGGTACCGAGGC
CACCTACACCTCCGGAAGGAGTACGTTGACATCATCCAGCCCTAG

Translation (224 aa):
MPWSPLAALSWALVLRLLALLWPPGRGEACSCAPAHPQQHFCHSALVIRAKISSEKVVPASKDPADTQKL
IRYEIKQIKMFKGFEKAKDIQYVYTPFDSSLCGVKLETNSHKQYLLTGQILSDGKVFIHLCNYIEPWEDL
SLVQRESLNHHYHQNCGCQITTCYAVPCTISAPNECLWTDWLLERKLYGYQAQHYVCMKHVDGICSWYRG
HLHLRKEYVDIIQP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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