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Report for CCDS20399.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20399.1 Public Mus musculus 6 Lrrn1 23 108 98 CCDS HistoryNCBI Gene:16979Re-query CCDS DB by CCDS ID:20399.1Re-query CCDS DB by GeneID:16979See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20399.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049285.9 ENSMUSP00000037096.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049285.9Link to Ensembl Protein Viewer:ENSMUSP00000037096.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049285Re-query CCDS DB by Protein ID:ENSMUSP00000037096
Original member Current member NCBI NM_008516.4 NP_032542.1 Accepted alive Link to Nucleotide Sequence:NM_008516.4Link to Protein Sequence:NP_032542.1Re-query CCDS DB by Nucleotide ID:NM_008516Re-query CCDS DB by Protein ID:NP_032542Link to BLAST:NP_032542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032542.1 716 Q61809 716 100% 0 0

Chromosomal Locations for CCDS 20399.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 107567243 107569393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGCCAGATTGAGCACTGGGAAAGCAGCTTGCCAGGTGGTGCTGGGCTTGCTGATAACTTCATTAACTG
AA
TCTTCCATACTGACTAGTGAGTGTCCCCAGCTTTGTGTTTGTGAAATTCGTCCTTGGTTTACCCCACA
G
TCCACCTACAGAGAAGCCACCACCGTGGATTGTAATGACCTCCGCCTAACCAGGATCCCTGGCAACCTC
TCT
AGTGACACACAAGTGCTTCTCTTACAGAGCAATAACATCGCCAAGACCGTGGACGAGCTGCAGCAGC
TC
TTCAACTTGACCGAGCTGGATTTCTCCCAGAACAACTTTACAAACATCAAAGAGGTAGGGCTGGCAAA
C
TTGACCCAGCTCACAACCCTGCATCTAGAGGAAAATCAGATTTCAGAGATGACGGATTACTGTCTGCAA
GAC
CTCAGCAACCTTCAAGAACTCTACATCAACCACAACCAGATCAGCACAATCTCTGCCAACGCCTTTT
CT
GGCTTGAAAAATCTCTTGAGGCTGCACCTGAATTCCAATAAGTTGAAAGTGATCGATAGCCGCTGGTT
T
GATTCCACTCCCAACCTGGAAATTCTCATGATTGGGGAAAACCCTGTGATTGGAATCCTGGACATGAAC
TTC
AGACCTCTCTCCAACCTGAGAAGCCTAGTGTTAGCAGGAATGTACCTCACTGATGTTCCCGGAAACG
CC
TTGGTAGGCTTGGATAGCCTCGAGAGCCTGTCTTTCTATGACAACAAACTGATCAAAGTCCCTCAACT
T
GCCCTGCAAAAAGTTCCAAATTTGAAATTTTTAGACCTCAATAAAAATCCTATTCACAAAATCCAAGAA
GGA
GACTTTAAAAATATGCTTCGGTTAAAAGAACTGGGAATCAACAACATGGGAGAGCTGGTTTCCGTGG
AC
CGCTATGCCCTGGATAACTTGCCAGAATTGACAAAGCTCGAAGCAACCAATAACCCCAAACTGTCATA
C
ATCCACCGTTTGGCTTTCCGTAGTGTGCCGGCTCTAGAAAGCTTAATGTTGAACAACAATGCCTTGAAT
GCC
GTGTACCAAAAAACAGTGGAATCTCTTCCCAATCTGCGTGAGATCAGCATCCACAGCAACCCGCTGA
GG
TGTGACTGTGTCATCCACTGGATCAACTCCAACAAAACCAACATTCGCTTCATGGAGCCCCTCTCCAT
G
TTCTGTGCCATGCCACCGGAATACAGGGGGCAGCAGGTGAAGGAGGTCCTAATCCAGGACTCAAGTGAG
CAG
TGCCTCCCGATGATATCGCACGATACATTCCCTAATCATCTAAACATGGACATTGGTACAACACTTT
TC
CTAGACTGTCGGGCCATGGCTGAGCCAGAACCAGAGATTTACTGGGTCACTCCCATTGGAAATAAGAT
A
ACCGTGGAAACTCTTTCAGACAAATACAAGCTGAGTAGTGAGGGCACCTTGGAGATAGCAAACATACAG
ATT
GAAGACTCAGGAAGGTACACCTGCGTTGCCCAGAATGTCCAAGGAGCAGACACTCGAGTGGCAACTA
TC
AAGGTTAATGGAACCCTTCTAGATGGTGCACAGGTGCTGAAAATATATGTCAAACAGACAGAATCTCA
T
TCGATTTTAGTATCTTGGAAAGTTAATTCCAATGTCATGACATCGAACTTGAAATGGTCATCTGCCACT
ATG
AAGATCGACAACCCCCACATAACATACACAGCCAGGGTGCCAGTAGATGTTCATGAATATAACCTAA
CA
CATCTGCAGCCTTCTACGGATTATGAAGTGTGTCTCACGGTGTCCAACATCCATCAGCAGACTCAGAA
G
TCATGTGTCAATGTCACAACCAAAACCGCTGCCTTCGCCCTGGACATCTCTGACCATGAAACCAGCACC
GCC
CTTGCTGCGGTGATGGGGTCCATGTTTGCCGTCATCAGTCTAGCATCCATCGCTATTTACATCGCGA
AA
AGGTTTAAGAGGAAAAATTACCACCATTCGCTGAAAAAGTATATGCAAAAAACCTCGTCCATCCCACT
G
AACGAGCTGTACCCCCCACTCATTAACCTCTGGGAAGCTGACAGTGACAAGGACAAAGATGGCTCGGCA
GAC
ACCAAGCCAACCCAGGTTGACACATCCAGAAGCTATTACATGTGGTAA


Translation (716 aa):
MARLSTGKAACQVVLGLLITSLTESSILTSECPQLCVCEIRPWFTPQSTYREATTVDCNDLRLTRIPGNL
S
SDTQVLLLQSNNIAKTVDELQQLFNLTELDFSQNNFTNIKEVGLANLTQLTTLHLEENQISEMTDYCLQ
D
LSNLQELYINHNQISTISANAFSGLKNLLRLHLNSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMN
F
RPLSNLRSLVLAGMYLTDVPGNALVGLDSLESLSFYDNKLIKVPQLALQKVPNLKFLDLNKNPIHKIQE
G
DFKNMLRLKELGINNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALN
A
VYQKTVESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYRGQQVKEVLIQDSSE
Q
CLPMISHDTFPNHLNMDIGTTLFLDCRAMAEPEPEIYWVTPIGNKITVETLSDKYKLSSEGTLEIANIQ
I
EDSGRYTCVAQNVQGADTRVATIKVNGTLLDGAQVLKIYVKQTESHSILVSWKVNSNVMTSNLKWSSAT
M
KIDNPHITYTARVPVDVHEYNLTHLQPSTDYEVCLTVSNIHQQTQKSCVNVTTKTAAFALDISDHETST
A
LAAVMGSMFAVISLASIAIYIAKRFKRKNYHHSLKKYMQKTSSIPLNELYPPLINLWEADSDKDKDGSA
D
TKPTQVDTSRSYYMW




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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