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Report for CCDS19882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19882.1 Public Mus musculus 5 Slc7a1 23 108 98 CCDS HistoryNCBI Gene:11987Re-query CCDS DB by CCDS ID:19882.1Re-query CCDS DB by GeneID:11987See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048116.14 ENSMUSP00000046714.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048116.14Link to Ensembl Protein Viewer:ENSMUSP00000046714.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048116Re-query CCDS DB by Protein ID:ENSMUSP00000046714
Original member NCBI NM_001301424.1 NP_001288353.1 Updated not alive Link to Nucleotide Sequence:NM_001301424.1Link to Protein Sequence:NP_001288353.1Re-query CCDS DB by Nucleotide ID:NM_001301424Re-query CCDS DB by Protein ID:NP_001288353
Current member NCBI NM_001301424.2 NP_001288353.1 Accepted alive Link to Nucleotide Sequence:NM_001301424.2Link to Protein Sequence:NP_001288353.1Re-query CCDS DB by Nucleotide ID:NM_001301424Re-query CCDS DB by Protein ID:NP_001288353Link to BLAST:NP_001288353.1
Original member NCBI NM_007513.4 NP_031539.3 Updated not alive Link to Nucleotide Sequence:NM_007513.4Link to Protein Sequence:NP_031539.3Re-query CCDS DB by Nucleotide ID:NM_007513Re-query CCDS DB by Protein ID:NP_031539
Current member NCBI NM_007513.5 NP_031539.3 Accepted alive Link to Nucleotide Sequence:NM_007513.5Link to Protein Sequence:NP_031539.3Re-query CCDS DB by Nucleotide ID:NM_007513Re-query CCDS DB by Protein ID:NP_031539Link to BLAST:NP_031539.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288353.1 622 Q09143 622 100% 0 0
NP_031539.3 622 Q09143 622 100% 0 0

Chromosomal Locations for CCDS 19882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 148332440 148332543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148333890 148333998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148334492 148334658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148335377 148335594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148337107 148337209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148340536 148340675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148341933 148342155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148342738 148342856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148345803 148345959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148348153 148348311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148352066 148352435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGGCTGCAAAAACCTGCTCGGTCTGGGCCAGCAGATGCTGCGCCGGAAGGTGGTGGACTGCAGCCGGG
AGGAGAGCCGGCTGTCCCGCTGCCTCAACACCTATGACCTGGTAGCTCTTGGGGTGGGCAGCACCTTGGG
CGCTGGTGTCTATGTCCTAGCCGGTGCCGTGGCCCGTGAAAATGCTGGCCCTGCCATCGTCATCTCCTTC
TTGATTGCTGCTCTCGCCTCCGTGCTGGCCGGCCTGTGCTACGGCGAGTTTGGTGCCCGTGTCCCCAAGA
CGGGCTCAGCCTACCTCTACAGCTACGTGACGGTGGGGGAGCTTTGGGCCTTCATCACTGGCTGGAACCT
GATTCTCTCCTACATCATCGGTACTTCAAGCGTGGCAAGAGCCTGGAGTGCGACTTTTGACGAGCTGATA
GGCAAGCCCATCGGAGAGTTCTCACGTCAGCACATGGCCCTGAATGCTCCTGGGGTGCTGGCCCAAACCC
CGGACATATTTGCTGTGATTATAATTATCATCTTAACAGGACTGTTAACTCTTGGCGTGAAGGAGTCAGC
CATGGTCAACAAAATTTTCACCTGTATCAATGTCCTGGTCTTGTGCTTCATCGTGGTGTCCGGGTTCGTG
AAAGGCTCCATTAAAAACTGGCAGCTCACGGAGAAAAATTTCTCCTGTAACAACAACGACACAAACGTGA
AATACGGTGAGGGAGGGTTTATGCCCTTTGGATTCTCTGGTGTCCTGTCAGGGGCAGCGACCTGCTTTTA
TGCCTTCGTGGGCTTTGACTGCATCGCCACCACAGGGGAAGAAGTCAAGAACCCCCAGAAGGCCATTCCT
GTGGGCATCGTGGCGTCCCTCCTCATTTGCTTCATAGCGTACTTTGGCGTGTCCGCCGCTCTCACGCTCA
TGATGCCTTACTTCTGCCTGGACATCGACAGCCCGCTGCCTGGTGCCTTCAAGCACCAGGGCTGGGAAGA
AGCTAAGTACGCAGTGGCCATTGGCTCTCTCTGCGCACTTTCCACCAGTCTCCTAGGCTCCATGTTTCCC
ATGCCCCGAGTTATCTATGCCATGGCTGAAGATGGACTACTGTTTAAATTTTTGGCCAAAATCAACAATA
GGACCAAAACACCCGTAATCGCCACTGTGACCTCAGGCGCCATTGCTGCTGTGATGGCCTTCCTCTTTGA
ACTGAAGGACCTGGTGGACCTCATGTCCATTGGCACTCTCCTGGCTTACTCTTTGGTGGCTGCCTGTGTT
TTGGTCTTACGGTACCAGCCAGAACAACCTAATCTGGTATACCAGATGGCCAGAACCACCGAGGAGCTAG
ATCGAGTAGATCAGAATGAGCTGGTCAGTGCCAGTGAATCACAGACAGGCTTTTTACCGGTAGCCGAGAA
GTTTTCTCTGAAATCCATCCTCTCACCCAAGAACGTGGAGCCCTCCAAATTCTCAGGGCTAATTGTGAAC
ATTTCAGCCGGCCTCCTAGCCGCTCTTATCATCACCGTGTGCATTGTGGCCGTGCTTGGAAGAGAGGCCC
TGGCCGAAGGGACACTGTGGGCAGTCTTTGTAATGACAGGGTCAGTCCTCCTCTGCATGCTGGTGACAGG
CATCATCTGGAGACAGCCTGAGAGCAAGACCAAGCTCTCATTTAAGGTACCCTTTGTCCCCGTACTTCCT
GTCTTGAGCATCTTCGTGAACATCTATCTCATGATGCAGCTGGACCAGGGCACGTGGGTCCGGTTTGCAG
TGTGGATGCTGATAGGTTTCACCATCTATTTCGGTTATGGGATCTGGCACAGTGAGGAAGCGTCCCTGGC
TGCTGGCCAGGCAAAGACTCCTGACAGCAACTTGGACCAGTGCAAATGA

Translation (622 aa):
MGCKNLLGLGQQMLRRKVVDCSREESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISF
LIAALASVLAGLCYGEFGARVPKTGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARAWSATFDELI
GKPIGEFSRQHMALNAPGVLAQTPDIFAVIIIIILTGLLTLGVKESAMVNKIFTCINVLVLCFIVVSGFV
KGSIKNWQLTEKNFSCNNNDTNVKYGEGGFMPFGFSGVLSGAATCFYAFVGFDCIATTGEEVKNPQKAIP
VGIVASLLICFIAYFGVSAALTLMMPYFCLDIDSPLPGAFKHQGWEEAKYAVAIGSLCALSTSLLGSMFP
MPRVIYAMAEDGLLFKFLAKINNRTKTPVIATVTSGAIAAVMAFLFELKDLVDLMSIGTLLAYSLVAACV
LVLRYQPEQPNLVYQMARTTEELDRVDQNELVSASESQTGFLPVAEKFSLKSILSPKNVEPSKFSGLIVN
ISAGLLAALIITVCIVAVLGREALAEGTLWAVFVMTGSVLLCMLVTGIIWRQPESKTKLSFKVPFVPVLP
VLSIFVNIYLMMQLDQGTWVRFAVWMLIGFTIYFGYGIWHSEEASLAAGQAKTPDSNLDQCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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