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Report for CCDS19083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19083.1 Public Mus musculus 5 Rundc3b 23 108 98 CCDS HistoryNCBI Gene:242819Re-query CCDS DB by CCDS ID:19083.1Re-query CCDS DB by GeneID:242819See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047485.14 ENSMUSP00000040108.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047485.14Link to Ensembl Protein Viewer:ENSMUSP00000040108.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047485Re-query CCDS DB by Protein ID:ENSMUSP00000040108
Original member Current member NCBI NM_198620.1 NP_941022.1 Accepted alive Link to Nucleotide Sequence:NM_198620.1Link to Protein Sequence:NP_941022.1Re-query CCDS DB by Nucleotide ID:NM_198620Re-query CCDS DB by Protein ID:NP_941022Link to BLAST:NP_941022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941022.1 408 Q6PDC0 408 100% 0 0

Chromosomal Locations for CCDS 19083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 8492444 8492589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8494784 8494905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8520859 8521016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8528606 8528774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8548236 8548316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8559412 8559501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8569495 8569580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8579025 8579158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8603870 8603985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 8622488 8622612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGGCCTCCCGGAGCCTGGGGGGCCTGAGCGGGAGCCGCGGCGGCGGCGGCGGCGGCGGCGGCAAGAAGA
GCCTGAGCGCCCGCAACGCTGCGGTGGAGAGGAGGAACCTGATCACCGTGTGCAGATTTTCTGTGAAGAC
CCTGATTGATCGGTCTTGCTTTGAAACAATTGATGATTCATCTCCTGAATTTAATAACTTTGCAGCTGTT
CTGGAACAAATTCTAAGTCACCGGCTAAAAGGTCAAGTAACATGGTTTGGCTATGAAAGCCCACGTAGCT
TCTGGGACTATATCAGAGTGGCTTGCCGGAAAGTTTCACAAAACTGTATCTGTAGTATTGAAAATATGGA
AAATGTCAGCTCCTCCAGAGCTAAGGGTAGAGCCTGGATCAGAGTAGCACTCATGGAAAAACATTTGTCT
GAATACATCTCTACAGCTTTGAGAGACTTCAAAACAACCAGGAGGTTTTATGAAGATGGAGCCATTGTCT
TGGGTGAAGAAGCAAATATGCTTGCTGGCATGCTGCTTGGACTCAATGCTATTGACTTCAGCTTCTGCCT
AAAGGGAGAAGGATTAGATGGCACCTTCCCTGCTGTGATAGACTATACACCATATTTGAAGTTTGAACAA
AGTTCTGACAGCATCAGCAGTGACGAGGAGGAACTCAGGACGTTTGGGAGCAGTGACAGTGAGAGCAGCA
CCCCAGAGAATGTGGGACCGCCTCTCATCCTAGACGAGAACACCTGGTTCAACAAGTGCAAGAGAGTAAG
GCAGAAATACCAGCTTACCCTGGAGCAGAAGGGTTATCTTGAAGAACTCTTGCGGCTTCGTGAGAACCAA
CTTTCTGAATCTGTCTCTCAGAATAAAATCCTACTTCAGAGGATCGAAGATTCTGATCTGGCCCACAAAT
TGGAGAAAGAACAGTTAGAATATATCATTGTGGAGCTTCAAGATCAGCTTAAAAGTTACCAAAGCCTTGA
CCAGTTATCAGCAGAAGTTAGCCTTTCTCAGGCCTCATTGGATCCCAGCCACTCACAAGAAGGAGATGGA
AAGCAAGACTCATTGAATTTCATTGGTGAAGGTAAAGAAGATACCCCCTCACTTCTTGGCCTCTGTGGGT
CCCTGACATCAGTGGCAAGTTACAAGTCCCTAACAAGCCTAAAATCCAACGACTGCCTTGCAAGCCCCAC
CACGGAGCTAACCAGCCCAGGCCTGACTCCATCCTGA

Translation (408 aa):
MASRSLGGLSGSRGGGGGGGGKKSLSARNAAVERRNLITVCRFSVKTLIDRSCFETIDDSSPEFNNFAAV
LEQILSHRLKGQVTWFGYESPRSFWDYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLS
EYISTALRDFKTTRRFYEDGAIVLGEEANMLAGMLLGLNAIDFSFCLKGEGLDGTFPAVIDYTPYLKFEQ
SSDSISSDEEELRTFGSSDSESSTPENVGPPLILDENTWFNKCKRVRQKYQLTLEQKGYLEELLRLRENQ
LSESVSQNKILLQRIEDSDLAHKLEKEQLEYIIVELQDQLKSYQSLDQLSAEVSLSQASLDPSHSQEGDG
KQDSLNFIGEGKEDTPSLLGLCGSLTSVASYKSLTSLKSNDCLASPTTELTSPGLTPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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