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Report for CCDS18788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18788.1 Public Mus musculus 4 Ifnlr1 23 108 98 CCDS HistoryNCBI Gene:242700Re-query CCDS DB by CCDS ID:18788.1Re-query CCDS DB by GeneID:242700See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074408.6 ENSMUSP00000074009.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074408.6Link to Ensembl Protein Viewer:ENSMUSP00000074009.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074408Re-query CCDS DB by Protein ID:ENSMUSP00000074009
Original member NCBI NM_174851.3 NP_777276.3 Updated not alive Link to Nucleotide Sequence:NM_174851.3Link to Protein Sequence:NP_777276.3Re-query CCDS DB by Nucleotide ID:NM_174851Re-query CCDS DB by Protein ID:NP_777276
Current member NCBI NM_174851.4 NP_777276.3 Accepted alive Link to Nucleotide Sequence:NM_174851.4Link to Protein Sequence:NP_777276.3Re-query CCDS DB by Nucleotide ID:NM_174851Re-query CCDS DB by Protein ID:NP_777276Link to BLAST:NP_777276.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777276.3 535 Q8CGK5 535 100% 0 0

Chromosomal Locations for CCDS 18788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135686542 135686599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135690522 135690645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135698790 135698971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135701228 135701370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135703710 135703869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135704169 135704299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135705053 135705862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGTGGCGGGCCGACCGGTGGGCGCCCCTACTCCTGTTCCTGTTGCAGAGCGCCCTAGGAAGGCCCCGTC
TAGCCCCACCCAGAAACGTGACACTCTTCTCCCAGAACTTCACTGTTTACCTGACATGGCTTCCGGGGCT
TGGGAGCCCCCCAAATGTGACCTATTTCGTGACCTACCAAAGCTATATCAAAACCGGTTGGCGACCAGTG
GAGCATTGTGCAGGTATCAAGGCTCTGGTGTGTCCCCTGATGTGCCTGAAGAAACTGAACCTGTACTCCA
AGTTCAAAGGACGAGTACAGGCAGCTTCCGCACACGGCAGGTCCCCACGGGTGGAGTCCCGGTACCTGGA
ATACCTTTTTGACGTGGAGCTAGCCCCGCCCACCCTGGTGCTCACCCAGATGGAGAAGATCCTAAGGGTC
AACGCTACCTACCAGCTGCCACCTTGCATGCCGTCGCTGGAACTGAAGTACCAGGTGGAATTCTGGAAGG
AGGGTCTGGGAAGCAAGACCCTGTTTCCTGACACTCCCTATGGCCAGCCAGTGCAGATTCCTCTCCAGCA
AGGTGCTAGCCGACGCCACTGCCTCAGCGCCAGAACCGTCTATACCTTAATTGACATTAAGTACAGCCAG
TTCTCTGAGCCCAGCTGCATCTTCCTAGAGGCTCCAGGGGACAAAAGAGCTGTCCTGGCAATGCCCTCAC
TCTTGCTTCTACTGATAGCAGCCGTTGCAGCAGGTGTGGCATGGAAGATAATGAAAGGAAACCCCTGGTT
TCAGGGGGTGAAGACGCCCCGGGCACTGGACTTTTCTGAATACAGATACCCAGTGGCAACCTTTCAGCCC
AGTGGACCTGAGTTCTCTGATGACTTGATCCTTTGTCCCCAGAAGGAACTGACCATAAGGAACAGGCCAG
CCCCTCAGGTCAGAAACCCAGCCACGCTACAGGCAGGACCAGAAAGAGACAGTACTGAGGATGAAGACGA
GGACACAGACTACGATGACGACGGTGACAGCGTCCAGCCCTACCTGGAACGGCCCCTCTTCATCAGCGAG
AAGCCCCGGGTTATGGAACACTCGGAGACAGACGAGTCTGGGGTGGATTCAGGGGGGCCTTGGACATCCC
CAGTTGGGAGTGACGGCTCCTCTGCATGGGACTCTTCAGACAGGAGCTGGTCCAGCACAGGGGACTCCTC
ATATAAGGATGAAGTTGGGTCTTCCAGCTGTTTGGACCGAAAGGAGCCGGACCAGGCGCCCTGTGGGGAT
TGGCTCCAGGAGGCTCTCCCATGCCTGGAATTTTCTGAGGACTTGGGCACCGTGGAAGAGCCTCTGAAGG
ATGGCCTCTCCGGGTGGAGGATTTCTGGTTCCTTATCCTCAAAGAGAGATCTGGCTCCTGTGGAGCCCCC
AGTTTCTCTTCAGACACTGACTTTCTGCTGGGTCAACAATCCTGAGGGGGAGGAGGAACAGGAGGACGAG
GAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGACTGGGAATCAGAACCTAAGGGCAGCAATGCCGGCTGTT
GGGGCACTTCAAGCGTGCAGAGGACGGAGGTCAGGGGCCGGATGCTGGGAGATTACTTGGTCAGGTGA

Translation (535 aa):
MWRADRWAPLLLFLLQSALGRPRLAPPRNVTLFSQNFTVYLTWLPGLGSPPNVTYFVTYQSYIKTGWRPV
EHCAGIKALVCPLMCLKKLNLYSKFKGRVQAASAHGRSPRVESRYLEYLFDVELAPPTLVLTQMEKILRV
NATYQLPPCMPSLELKYQVEFWKEGLGSKTLFPDTPYGQPVQIPLQQGASRRHCLSARTVYTLIDIKYSQ
FSEPSCIFLEAPGDKRAVLAMPSLLLLLIAAVAAGVAWKIMKGNPWFQGVKTPRALDFSEYRYPVATFQP
SGPEFSDDLILCPQKELTIRNRPAPQVRNPATLQAGPERDSTEDEDEDTDYDDDGDSVQPYLERPLFISE
KPRVMEHSETDESGVDSGGPWTSPVGSDGSSAWDSSDRSWSSTGDSSYKDEVGSSSCLDRKEPDQAPCGD
WLQEALPCLEFSEDLGTVEEPLKDGLSGWRISGSLSSKRDLAPVEPPVSLQTLTFCWVNNPEGEEEQEDE
EEEEEEEEEEDWESEPKGSNAGCWGTSSVQRTEVRGRMLGDYLVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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