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Report for CCDS18223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18223.1 Public Mus musculus 4 E130308A19Rik 23 108 98 CCDS HistoryNCBI Gene:230259Re-query CCDS DB by CCDS ID:18223.1Re-query CCDS DB by GeneID:230259See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070150.10 ENSMUSP00000065702.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070150.10Link to Ensembl Protein Viewer:ENSMUSP00000065702.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070150Re-query CCDS DB by Protein ID:ENSMUSP00000065702
Original member Current member NCBI NM_001015681.2 NP_001015681.1 Accepted alive Link to Nucleotide Sequence:NM_001015681.2Link to Protein Sequence:NP_001015681.1Re-query CCDS DB by Nucleotide ID:NM_001015681Re-query CCDS DB by Protein ID:NP_001015681Link to BLAST:NP_001015681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001015681.1 716 Q8C4P0-1 716 100% 0 0

Chromosomal Locations for CCDS 18223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 59690168 59691338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59737562 59737734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 59752233 59753039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGAGGATTGTCTTCATACCTCATCTGAGAATCTGTCCAAATTGGTCAGCTGGGCCCACAGCCATGGGA
CCATTTGCAGCCTCATTCCAAACCTGAAACACTTGCTTTCTGAAGGTTCCCATGGGAACCTGACTGCAAT
GTGGGGCTGTAGTGCCGGCCATGCGTACCACTGGCCACTAACAGCTACTTGCAGAGCTGGGTCCCAAGAG
AGGGTTTGTTTCCAGGACAACCGAAGTTTTAATTCTGATAGTCCCAGTATAATTGGGGTGCCTTCTGAGA
CACAGACTAGCCCTGTGGAAAGGTACCCTGGGAGACCTGTGAAGGCAAAGCTGGACTGTAATCGGACCAG
AGACTCTTGTGACTTCTCTTACTGCAGTGAGCCCTCTGAACTGGATGAAGCTGTCGAGGAGTATGAAGAT
GAAAACACACTGTTTGACATGGTTTGCGAGTCTTCTGTTACAGATGAGGACAGTGACTTTGAACCCCAAA
CCCAGAGACCTCAAAGCATTGCTCGCAAAAGGCCAGGAATCGTCCCATCTTCCATCCATTCAAGTTCCCA
GGGACAGATGGTCGATGAATGCAGTAATGATGTCATCATCAAGAAAATCAAGCAAGAGATTCCAGAAGAT
TATTACATTGTGGCAAATGCAGAGCTGACTGGAGGAGTGGATGGACCAGCCCTTTCATTGACACAGATGG
CAAAACCCAAACCCCAGACTCATGCTGGTCCCTCCTGTGTAGGGTCTGCTAAACTGATTCCCCATGTAAC
ATCTGCCATCAACACGGAATTAGACCCACACATTCTGTCAGCCTCTCCCTCTGTTATCTCCAGACCGATC
ATCCCAAAGACTGCTAGGGTATCTCTGGCTTCACCAAACAGAGGACCCCCTGGTGCCCATGGCACTGCCC
ACCAGGTGACCATGCAGATGCCTGTGAGCACATCACATCCTAACAAACAGATCAGTATCCCTTTGTCTGC
TCTGCAGTTGCCTGGACAGGATGAGCAAGTTGCTTCGGAGGAGTTCCTGCCCCACTTGCCTAGCCAGGTC
TCATCATGTGAGGTAGCCCTTTCTCCCTCTGTTAACACAGAGCCTGAAGTGAGCTCCAGTCAACAGCAGC
CCCCTGCTGCTCCAACCATAACCACTGAAGCCACCGCGCAGTGCATTCCAGCTTATTCTACTAAGCTCAA
CAAATTTCCTGTATTTAATATTAATGATGACTTGAATGGTCTGTGTACCAGTGCAGTGAGCCCAAACACC
ACCAAAGCCACGAGGTACGCCCTAAATGTGTGGCGCTACTGGTGCATGACCAACGGGCTCAAAGACCACA
CGGACATCACCAAGATCCCTGCAGTGAAACTGAATGAGCTGCTTGAGAACTTTTATGTCACCGTCAAGAA
GAGTGACGGCTCAGACTTCCTGGCTACCTCGCTTCATGCCATTCGCCGAGGCCTGGACCGCATCCTGAAG
AACGCGGGTGTGGGCTTTTCCATCACCAGCAGCACCTTCAGCTCCTCCACCAAGAAACTCAAGGAGAAGC
TGTGGGTCCTGAGCAAGGCAGGGATGTCGGGGGCCCGTTCCCGCAATATCGTCTACTTCTCCCTTTCTGA
TGAGGAGGAGATGTGGCAGGCAGGGTGTCTAGGGGATGACAGCCCAATTACTCTCCTGTCCACAGTGGTC
AAGTACAACAGCCAGTATCTGAATATGCGGACTCTGCAGGAACATGCAGATCTGATGTATGGTGACATCG
AGTTGCTCAAAGATCCGCAAAACCAGCCCTACTTTGCCCGGACCGACAGTGTCAAGCGGGAGAGCCGGAG
TGGTTCGACCAGAGTGTGCCATGGGAAAATCTACCATGAGCACTCCAGGGGACACAAGCAGTGTCCTTAC
TGCCTCCTCTACAAGTACATGTACATCCACCGGCCACCCACCCAAATGGAGGCCAAGTCTCCCTTCTACC
TTACAGCCCGGAAGGAGGCCACGGACATGGGCAGCGTGTGGTACGAAGAGCAGAGAATGGGGTTACGGTC
TCTCCGGGGAATTGTCCCAAATTTAGCCAGGAAGGTCAAGCTGGAAAACTGTGAGAACTTCACCTTCGTC
TCCTTCACTCAGGTCTCCAGGCGACTTGGCTCCCATAGCTGCTGCCAGTGA

Translation (716 aa):
MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQE
RVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYED
ENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSSSQGQMVDECSNDVIIKKIKQEIPED
YYIVANAELTGGVDGPALSLTQMAKPKPQTHAGPSCVGSAKLIPHVTSAINTELDPHILSASPSVISRPI
IPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVASEEFLPHLPSQV
SSCEVALSPSVNTEPEVSSSQQQPPAAPTITTEATAQCIPAYSTKLNKFPVFNINDDLNGLCTSAVSPNT
TKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILK
NAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVV
KYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPY
CLLYKYMYIHRPPTQMEAKSPFYLTARKEATDMGSVWYEEQRMGLRSLRGIVPNLARKVKLENCENFTFV
SFTQVSRRLGSHSCCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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