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Report for CCDS18136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18136.1 Public Mus musculus 4 Exosc3 23 108 98 CCDS HistoryNCBI Gene:66362Re-query CCDS DB by CCDS ID:18136.1Re-query CCDS DB by GeneID:66362See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 18136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030003.9 ENSMUSP00000030003.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030003.9Link to Ensembl Protein Viewer:ENSMUSP00000030003.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030003Re-query CCDS DB by Protein ID:ENSMUSP00000030003
Original member Current member NCBI NM_025513.4 NP_079789.1 Accepted alive Link to Nucleotide Sequence:NM_025513.4Link to Protein Sequence:NP_079789.1Re-query CCDS DB by Nucleotide ID:NM_025513Re-query CCDS DB by Protein ID:NP_079789Link to BLAST:NP_079789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079789.1 274 Q7TQK4 274 100% 0 0

Chromosomal Locations for CCDS 18136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45316827 45317028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45317678 45317829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45319550 45319699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45320271 45320591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGCTGAAGTACTGTCCGCGGGACCGGAGTCGGTGGCGGGCTGCCGAGCACGGGCCGTGCACAAGGTGC
TGAATCAGGTGGTTCTCCCCGGGGAGGAGCTGGTGCTGCCGGACCACGAGGACGTAGACGGCCTTGGCGG
CGCCGGGGAGCAGCCGTTACGCCTGAATGCGGGTGCGCGCCCGAGGCTGCGCGTAGTGTGTGGCCCAGGT
TTGCGACGCTGCGGGGACCGTCTGCTGGTCACCAAGTGTGGCCGCCTGCGTCACAAGGAGCCCAGCGGAG
GCGGCGGCGGCGTTTACTGGGTGGACTCGCAGCAGAAGCGGTATGTACCTGTGAAAGGGGACCACGTGAT
TGGCATAGTGATCGCTAAATCTGGAGATATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCGTCTTTG
TCTTACCTGGCATTTGAAGGGGCAACTAAAAGAAACAGACCAAATGTGCAGGTTGGAGATCTCATCTATG
GCCAGTGTGTGGTCGCTAATAAAGACATGGAACCAGAGATGGTCTGCATTGACAGCTGTGGCCGCGCCAA
TGGGATGGGTGTGATTGGGCAGGATGGCCTGCTCTTCAAAGTGACGTTGGGCTTAATTAGAAAGCTATTA
GCTCCAGATTGTGAAATTGTGCAAGAGCTGGGAAAACTCTATCCATTGGAGATTGTGTTTGGAATGAATG
GAAGAATATGGGTCAAAGCTAAGACCATTCAGCAGACGTTAATTTTAGCAAATGTCTTAGAAGCTTGTGA
ACACATGACAACAGAGCAAAGAAAACAGATCTTTGCCAGACTGGCAGAGAGTTGA

Translation (274 aa):
MAEVLSAGPESVAGCRARAVHKVLNQVVLPGEELVLPDHEDVDGLGGAGEQPLRLNAGARPRLRVVCGPG
LRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASL
SYLAFEGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL
APDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARLAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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