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Report for CCDS16512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16512.1 Public Mus musculus 2 Slc5a12 23 108 98 CCDS HistoryNCBI Gene:241612Re-query CCDS DB by CCDS ID:16512.1Re-query CCDS DB by GeneID:241612See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045972.12 ENSMUSP00000047340.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045972.12Link to Ensembl Protein Viewer:ENSMUSP00000047340.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045972Re-query CCDS DB by Protein ID:ENSMUSP00000047340
Original member Current member NCBI NM_001003915.2 NP_001003915.1 Accepted alive Link to Nucleotide Sequence:NM_001003915.2Link to Protein Sequence:NP_001003915.1Re-query CCDS DB by Nucleotide ID:NM_001003915Re-query CCDS DB by Protein ID:NP_001003915Link to BLAST:NP_001003915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003915.1 623 Q49B93-2 623 100% 0 0

Chromosomal Locations for CCDS 16512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 110597602 110597940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110605724 110605789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110609416 110609467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110610125 110610192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110616674 110616828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110616944 110617084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110620283 110620412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110621715 110621803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110624136 110624248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110632714 110632781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110637961 110638059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110640735 110640901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110641722 110641825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110644344 110644471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110646264 110646416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGAGGGTGAAGAACTTTGAAGCTTGGGATTATGTTGTGTTTGCAGGTCTCTTCGTCATTTCCTCTGGAA
TT
GGCGTGTTCTTTGCCATAAAGGAGAGAAAAAAGACAACATCTCGGGAATTCTTAGTAGGAGGAAGGCA
A
ATGAGCTTTGGCCCTGTAGCTTTGTCTCTGACAGCCAGCTTCATGTCAGCTGTCACTGTCCTGGGGACT
CCT
GCTGAAGTCTACCGCTTTGGGGCATCCTTCTTCCTTTTCCTCATTTCATATGTATTTGTGGTCTTTT
TC
ACATCTGAGCTCTTTCTTCCTGTGTTCTACAGGTCTGGCATCACAAGCACCTATGAGTACTTACAGCT
A
CGATTCAACAAGCCAGTTCGATATGCAGCAACCATTATCTACATCGTACAGACGATTCTCTATACTGGA
GTC
GTGGTCTACGCCCCTGCTCTGGCTCTCAACCAAGTGACTGGTTTTAATCTATGGGCCTCTGTGTTTG
CA
ACAGGAATCGTTTGCACATTCTACTGTAGTTTGGGGGGTTTAAAAGCAGTGGTGTGGACAGATGCATT
T
CAGATGGTTGTCATGATTGTGGGCTTCTTAACAGTCCTTATCCAAGGATCAAATCATGTTGGTGGCTTC
AAC
AATGTGTTAGAAAAAGCAGGAAACGGATCCCGGCTACACATTGTTGACTTTGATGTAGATCCTCTAA
GA
CGGCACACTTTTTGGACAATTACAATAGGAGGAACTTTTACTTGGCTTGGAGTCTATGGAGTGAACCA
A
TCAACCATCCAGAGATGCATCTCTTGCAAAACAGAAAAGCATGCTAAGCTTGCCTTGTACTTTAACTTG
TTG
GGTCTCTGGATAATTGTGGCGTGTGCCGTCTTCTCTGGCTTGATCATGTACTCCCACTTCAAGGATT
GT
GACCCTTGGACTTCTGGTGTTATTTCAGCACCAGACCAGCTGATGCCATATTTTGTCATGGAGATTTT
T
GCAACTATGCCAGGGCTGCCAGGACTTTTTGTGGCTTGTGCCTTTAGTGGAACTCTGAGCACAGTGGCT
GCC
AGCATCAATGCCTTAGCAACAGTGACCTTTGAGGATTTTGTCAAGAGCTGTTTTCCACACCTCTCCG
AC
AAACTGAGTACCTGGATCAGTAAAGGCTTATGTATCCTTTTCGGTATTATGTGTACCTCCATGGCTGT
G
GTTGCATCCCTCATGGGGAGTGTTGTACAGGCCCCCGGCATAGTCTCACAAGAGAGAGCTATAACTGGG
TCC
TTTCAGCGAAATCTTGCTAGTGTATGCTATGGTGTCAGCATTTGGAAGCTGATTATGGGTGCTCTAG
GA
GGACTTCTTACTGGAATCACGTTGTCATTCTGGGTGGCCATTGGATCTTTCATTTACCCTGCACCAGA
A
TCCAAGACATTACCTTTACCTCTATCAACAGAGCATTGTGTAGAACTAAATATAACAACAACAGTAGCC
CCA
CAGATTTCCAGCAGACCTGTCCTAGCTGACACATGGTACTCACTCTCCTACCTTTACTTCAGTGCTG
TG
GGCTGCCTGGGATGTATCGCTGCTGGAATAATCATCAGTTTCCTCACAGGCAAGCAAAGAGGCAAAGA
C
ATTGATCCACTTTTAATAAGACCTGTTTGCAATTTATTTTGCTTTTGGTCTAAGAAATACAAAACTCTG
TGC
TGGTGTGGAGTTCAGCATGACCGGGAAACAGAGCAGGATTACCTTGACAGTGGCAGTGCCTGGAAAC
AA
GGGGTTGAATCTGGCCTACAGAATGGACTCAAGCAAGACACCTTGGCTCAGATTCCAGGCTACAACCC
T
AAAGAAAAAAGCTACAGCAACAGTGTGCCGGAGAAGACCACTTATTTCTAG


Translation (623 aa):
MRVKNFEAWDYVVFAGLFVISSGIGVFFAIKERKKTTSREFLVGGRQMSFGPVALSLTASFMSAVTVLGT
P
AEVYRFGASFFLFLISYVFVVFFTSELFLPVFYRSGITSTYE
YLQLRFNKPVRYAATIIYIVQTILYTG
V
VVYAPALALNQ
VTGFNLWASVFATGIVCTFYCSLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSNHVGGF
N
NVLEKAGNGSRLHIV
DFDVDPLRRHTFWTITIGGTFTWLGVYGVNQSTIQRCISCKTEKHAKLALYFNL
L
GLWIIVACAVFSGLIMYSHFKDCDPWTSGVISAPDQ
LMPYFVMEIFATMPGLPGLFVACAFSGTLSTVA
A
SINALATVTFEDFVKSCFPHLSDKLSTWISKGL
CILFGIMCTSMAVVASLMGSVVQAPGIVSQERAITG
S
FQRNLASVCYGVSIWKLIM
GALGGLLTGITLSFWVAIGSFIYPAPESKTLPLPLSTEHCVELNITTTVA
P
QISS
RPVLADTWYSLSYLYFSAVGCLGCIAAGIIISFLTGKQRGKDIDPLLIRPVCNLFCFWSKKYKTL
C
WCGVQHDRETEQ
DYLDSGSAWKQGVESGLQNGLKQDTLAQIPGYNPKEKSYSNSVPEKTTYF



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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