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Report for CCDS16181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16181.1 Public Mus musculus 2 Itgav 23 108 98 CCDS HistoryNCBI Gene:16410Re-query CCDS DB by CCDS ID:16181.1Re-query CCDS DB by GeneID:16410See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16181.1
The coding region has been updated to represent a CDS sequence that is better supported by available transcript data and the reference genome sequence. The protein length is unchanged.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028499.10 ENSMUSP00000028499.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028499.10Link to Ensembl Protein Viewer:ENSMUSP00000028499.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028499Re-query CCDS DB by Protein ID:ENSMUSP00000028499
Original member NCBI NM_008402.3 NP_032428.2 Updated not alive Link to Nucleotide Sequence:NM_008402.3Link to Protein Sequence:NP_032428.2Re-query CCDS DB by Nucleotide ID:NM_008402Re-query CCDS DB by Protein ID:NP_032428
Current member NCBI NM_008402.4 NP_032428.2 Accepted alive Link to Nucleotide Sequence:NM_008402.4Link to Protein Sequence:NP_032428.2Re-query CCDS DB by Nucleotide ID:NM_008402Re-query CCDS DB by Protein ID:NP_032428Link to BLAST:NP_032428.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032428.2 1044 P43406 1044 100% 0 0

Chromosomal Locations for CCDS 16181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 83724735 83724919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83736510 83736640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83747853 83747944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83755806 83755920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83761868 83761929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83763652 83763697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83765768 83765893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83766627 83766671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83768295 83768338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83768692 83768748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83770053 83770105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83771135 83771337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83776368 83776559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83779014 83779059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83781939 83782046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83783805 83783863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83785333 83785487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83788917 83789054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83791195 83791262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83791893 83792040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83792551 83792643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83794234 83794313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83794919 83794999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83795439 83795544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83796086 83796244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83797351 83797452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83801770 83801883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83801978 83802085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83802880 83803002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 83803240 83803335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3135 nt):
ATGGCTGCTCCCGGGCGCCTGCTGCTACGCCCTCGCCCCGGCGGCCTCCTGCTGCTGCTGCCGGGTCTCC
TG
CTGCCCCTCGCCGACGCCTTCAACCTGGACGTCGAAAGTCCCGCCGAGTATGCGGGTCCCGAGGGAAG
T
TACTTCGGATTCGCCGTGGACTTCTTCGAGCCCAGCACGTCCTCCAGGATGTTTCTCCTGGTGGGAGCC
CCC
AAAGCGAACACGACCCAGCCTGGGATTGTAGAAGGAGGGCAAGTTCTCAAATGTGAATGCTCATCCA
GC
CGCCGGTGCCAGCCCATTGAGTTTGATTCAACAGGCAATCGAGATTATGCCAAAGATGACCCACTGGA
G
TTTAAGTCCCACCAGTGGTTTGGAGCCTCTGTGAGGTCAAAGCAGGATAAAATCTTGGCCTGTGCTCCA
TTG
TACCACTGGAGGACTGAGATGAAGCAGGAGAGAGAGCCAGTTGGAACCTGCTTTCTTCAGGACGGCA
CA
AAGACCGTTGAGTATGCTCCATGCAGGTCAAAAAATATTGATGCTGATGGCCAGGGATTTTGTCAAGG
A
GGATTCAGCATTGATTTTACTAAAGCTGACAGAGTACTTCTCGGTGGTCCTGGTAGCTTTTATTGGCAA
G
GT
CAGCTCATTTCGGACCAAGTGGCAGAAATCATATCTAAATATGACCCAAATGTCTACAGCATCAAAT
AT
AATAACCAATTAGCAACACGGACTGCACAAGCAATTTTTGATGACAGTTATTTGGGTTACTCTGTGGC
C
GTGGGAGACTTCAATGGTGACGGCATTGAAGATTTTGTCTCAGGAGTTCCAAGAGCAGCAAGGACTTTG
GGA
ATGGTTTATATTTATGATGGGAAAAATATGTCCTCTTTACACAATTTTACTGGTGAACAGATGGCTG
CG
TATTTTGGATTTTCTGTAGCTGCTACTGACATTAATGGGGATGATTACGCAGATGTGTTTATTGGAGC
C
CCCCTGTTCATGGACCGAGGTTCCGATGGGAAACTCCAGGAGGTTGGCCAGGTCTCAGTGTCTCTGCAG
AGA
GCAGTGGGAGACTTCCAGACTACAAAGCTGAACGGCTTTGAGGTTTTTGCCAGGTTTGGAAGTGCCA
TA
GCTCCATTGGGAGACCTGGACCAGGATGGCTTCAATGATATTGCAATTGCTGCTCCCTATGGTGGTGA
A
GATAAGAAGGGACTTGTTTATATCTTCAATGGAAGGTCCACAGGCTTGAATTCGGTGCCATCTCAAATC
CTC
GAGGGGCAGTGGGCTGCTCAGAGCATGCCCCCAAGCTTTGGCTATTCAATGAAGGGAGCTACAGATG
TA
GACAGGAATGGATATCCAGACTTAGTTGTAGGAGCTTTTGGTGTGGATCGAGCTGTCTTATACAGAGC
C
AGACCCGTTGTCACTGTAAATGCTGGCCTTGAAGTGTACCCTAGCATTTTAAATCAAGACAATAAGATC
TGC
CCGTTGCCTGGGACAGCTCTCAAGGTTTCCTGTTTTAATGTCAGATTCTGCTTAAAGGCAGATGGCA
AG
GGAACCCTTCCTCGGAAGCTCCACTTCCAGGTGGAGCTTCTACTGGATAAACTCAAGCAGAAGGGAGC
C
ATCCGACGAGCACTGTTTCTCCATAACAGGTCCCCGGTCCACTCCAAGACCATGACTGTTTTCAGGGGG
GGA
CAGATGCAGTGTGAGGAACTGGTCGCCTATCTTCGGGATGAATCTGAATTTAGAGACAAGCTCACTC
CC
ATCACCATTTTCATGGAGTATCGGTTGGACCAGAGAACGGCTGCTGATGCCACAGGCTTGCAGCCCAT
C
CTGAACCAGTTCACTCCGGCCAACGTCAGTCGGCAGGCTCATATTCTACTTGACTGTGGTGAAGACAAT
GTC
TGTAAACCTAAATTGGAAGTTTCTGTAAATAGTGATCAAAAGAAGATCTATATTGGGGACGACAACC
CT
CTGACACTGACTGTGAAGGCGCAGAATCAAGGGGAAGGCGCCTATGAAGCTGAGCTCATCGTTTCTAT
C
CCACCGCAGGCTGACTTCATCGGGGTTGTCCGGAACAACGAAGCCTTAGCAAGACTGTCCTGTGCATTT
AAG
ACAGAAAACCAAACTCGGCAGGTGGTGTGCGACCTTGGAAACCCGATGAAGGCTGGAACTCAACTGC
TC
GCTGGTCTTCGTTTCAGCGTGCACCAGCAGTCAGAGATGGATACTTCTGTGAAGTTTGACTTGAAAAT
C
CAGAGCTCTAATTCTTTTGACAATGTAAGTCCAGTTGTGTCTTACAAGGTTGACCTCGCCGTTTTGGCT
GCT
GTGGAGATAAGAGGAGTTTCAAGTCCAGATCATATCTTTCTTCCAATTCCAAATTGGGAGTACAAGG
AA
AACCCTGAGACTGAAGAAGACGTTGGGCCTATTGTTCAGCACATATATGAGCTGAGAAACAATGGTCC
A
AGTTCATTCAGCAAGGCAATTCTAAATCTCCAGTGGCCTTACAAATACAACAACAACACTCTGTTGTAC
ATT
CTTCATTACGACATTGACGGGCCAATGAACTGCACGGCAGATACAGAGATCAACCCTTTGAGAATCA
AG
ACACCCGAAAAGAATGACACAGCGGCGGCGGGACAGGGAGAAAGGAATCATCTCATCACCAAGCGGGA
T
CTCACCCTCAGAGAGGGAGATGTTCACACTTTGGGCTGTGGAATCGCCAAGTGCTTGCAGATCACCTGC
CAG
GTTGGTCGACTGGATAGAGGCAAGAGCGCAATCCTGTACGTGAAATCCCTGCTGTGGACCGAGACGT
TC
ATGAACAAGGAGAACCAGAACCATTCCTATTCGCTGAAGTCATCTGCTTCCTTTAATATCATAGAATT
C
CCTTACAAGAACCTGCCGATCGAGGATCTCTTCAACTCTACACTAGTCACCACTAACATCACCTGGGGC
ATT
CAGCCGGCGCCCATGCCTGTGCCTGTGTGGGTGATCATCTTGGCAGTTCTCGCAGGGCTGCTGCTAC
TG
GCTGTGTTGGTATTTGTAATGTACAGGATGGGCTTTTTCAAACGTGTCCGACCACCTCAAGAAGAGCA
A
GAAAGAGAACAGCTTCAGCCTCATGAGAATGGCGAAGGAAACTCTGAAACCTAA


Translation (1044 aa):
MAAPGRLLLRPRPGGLLLLLPGLLLPLADAFNLDVESPAEYAGPEGSYFGFAVDFFEPSTSSRMFLLVGA
P
KANTTQPGIVEGGQVLKCECSSSRRCQPIEFDST
GNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAP
L
YHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRS
KNIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQ
G
QLISDQVAEIISKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIEDFVSGVPRAARTL
G
M
VYIYDGKNMSSLHNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQ
R
AVGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFN
DIAIAAPYGGEDKKGLVYIFNGRSTGLNSVPSQI
L
EGQWAAQSMPPSFGYSMKGATDVDRNGYP
DLVVGAFGVDRAVLYRARPVVTVNAGLEVYPSILNQDNKI
C
PLPGTALKVS
CFNVRFCLKADGKGTLPRKLHFQVELLLDKLKQKGAIRRALFLHNRSPVHSKTMTVFRG
G
QMQCEELVAYLR
DESEFRDKLTPITIFMEYRLDQRTAADATGLQPILNQFTPANVSRQAHILLDCGEDN
V
CKPKLEVSVN
SDQKKIYIGDDNPLTLTVKAQNQGEGAYEAELIVSIPPQADFIGVVRNNEALARLSCAF
K
TENQTRQVVCDLGNPMKAGTQ
LLAGLRFSVHQQSEMDTSVKFDLKIQSSNSFDNVSPVVSYKVDLAVLA
A
VEIR
GVSSPDHIFLPIPNWEYKENPETEEDVGPIVQHIYELRNNGPSSFSKAILNLQWPYKYNNNTLLY
I
LHYDIDGPMNCTADTEINPLRIK
TPEKNDTAAAGQGERNHLITKRDLTLREGDVHTLGCGIAKCLQITC
Q
VGRLDRGKSAILYVKSLLWTETFMN
KENQNHSYSLKSSASFNIIEFPYKNLPIEDLFNSTLVTTNITWG
I
QPAPMPVPVWVIILAVLAGLLLLAVLVFVMYR
MGFFKRVRPPQEEQEREQLQPHENGEGNSET



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser