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Report for CCDS16111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16111.1 Public Mus musculus 2 Dcaf17 23 108 98 CCDS HistoryNCBI Gene:75763Re-query CCDS DB by CCDS ID:16111.1Re-query CCDS DB by GeneID:75763See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102701.4 ENSMUSP00000099762.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102701.4Link to Ensembl Protein Viewer:ENSMUSP00000099762.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102701Re-query CCDS DB by Protein ID:ENSMUSP00000099762
Original member Current member NCBI NM_198005.2 NP_932122.2 Accepted alive Link to Nucleotide Sequence:NM_198005.2Link to Protein Sequence:NP_932122.2Re-query CCDS DB by Nucleotide ID:NM_198005Re-query CCDS DB by Protein ID:NP_932122Link to BLAST:NP_932122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932122.2 505 Q3TUL7-2 505 99.604% 0 2

Chromosomal Locations for CCDS 16111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 71055994 71056119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71056495 71056598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71060353 71060443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71063359 71063495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71073121 71073199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71075447 71075536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71078060 71078164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71078474 71078579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71081911 71082053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71084425 71084534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71086539 71086626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71087315 71087398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71088347 71088601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGGCCGGACCCGGAAGGCCAATGTGTGCCGCAGGCTGAGTCGCCGGGCTCTGGGCTTCTATGCACGCG
AC
GCAGGCGTGGTGCAGAGGACGAACCTGGGCATCCTGCGGGCGCTGGTGTGCCAGGAGAGTACTAAATT
T
AAGAATGTTTGGACAACTCATTCCAAGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAAT
TAC
CGGTGCTGTGTCAGCAGTGTTGCATCAGAGCCAAGAAAACTTTATGAAATGCCAAAATGTTCCAAAT
CA
GAAAAAATTGAGGATGCTTTATTATGGGAATGCCCAGTGGGAGACATACTTCCTGACCCATCAGACTA
T
AAATCCTCACTCATAGCCCTGACTGCTCATAATTGGCTGCTTCGTATATCCGCAACTACAGGGGAAGTC
CTG
GAGAAAATATACCTTGCTTCCTACTGCAAATTCAGGTACCTGAGCTGGGACACACCTCAGGAGGTCA
TC
GCAGTGAAGTCGGCTCAGAACAAAGGCTCCGCAGCGGCTCGCCAGGCAGGCACTTCACCACCCGTTTT
G
TTGTACCTCGCAGTGTTCCGGGTTCTGCCCTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAGGTT
TTT
GAGAATGTCACAGATGCTACCTTGTCACATGGAATCCTGATTGTGATGTACAGCTCGGGACTAGTCA
GA
CTCTACAGCTTCCAAGCCATCATCGAACAGTTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAG
T
CAGGGCGGGACTACTGGGACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATGTTAAAATCACAGAC
TCA
CCACCTCCACTCTTTGAAGTTTCATCTCTGGAGAACGCATTCCAGATTGGAGGCCATCCTTGGCACT
AC
ATCATCACGCCTAATAAGAAGAAACAGAAAGGAGTTTTTCATATTTGTGCCCTAAAAGATAATTCTTT
G
GCAAAAAATGGAATCCAAGAAATGGAGTGCTGTTCATTAGAATCTGACTGGATCTATTTCCACCCTGAT
GCT
TCTGGAAGAATAATACATGTTGGCCCAAACCAAGTCAAAGTCTTGAAGCTAAGTGAGGTAGAAAATG
AT
AGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTGGGCTAAAAGAGAAGACAGAAAGGAAAATTT
A
ATCACCGTTACAGCTTCTGGACGTGTGGTGAAAAGAAATGTCAGCCTTCTGGATGATGACCCAGAACAA
GAG
ACTTTCAAAATCGTGGACTATGAAGATGAGTTGGACTTACTTTCCGTAGTAGCTGTCACTCAAATAG
AT
GCTGAAGGAAAAGCTCACCTGGATTTCCACTGTAATGAATATGGAACCTTACTCAAAAGCATCCCACT
A
GTGGAGTCATGGGATGTGGTATGTATAACGTCTGGGACACTAAGTTGTAAGGGTTTCCTTTACAGGTGC
CAT
TTATTAGACCATGTCCATATCAGTCCAGATTCACCTATGCTGTGA


Translation (505 aa):
MGRTRKANVCRRLSRRALGFYARDAGVVQRTNLGILRALVCQESTKFKNVWTTHSKSPIAYERGRIYFDN
Y
RCCVS
SVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPDPSDYKSSLIALTAHNWLLRISATTGEV
L
EKIYLASYCKF
RYLSWDTPQEVIAVKSAQNKGSAAARQAGTSPPVLLYLAVFRVLPFSLVGILEINKKV
F
ENVTDATLSHGILIVMYSSGLVRLYSFQAIIEQ
FMQQKLDLGCACSQGGTTGTVGEAPFGIPCNVKITD
S
PPPLFEVSSLENAFQIGGHPWHYIITPNKKKQKGVFHICALKDNSL
AKNGIQEMECCSLESDWIYFHPD
A
SGRIIHVGPNQV
KVLKLSEVENDSSQHQISEDFVIWAKREDRKENLITVTASGRVVKRNVSLLDDDPEQ
E
TFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVVCITSGTLSCKGFLYRC
H
LLDHVHISPDSPML




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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