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Report for CCDS16030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16030.1 Public Mus musculus 2 Rbm43 23 108 98 CCDS HistoryNCBI Gene:71684Re-query CCDS DB by CCDS ID:16030.1Re-query CCDS DB by GeneID:71684See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102767.7 ENSMUSP00000099828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102767.7Link to Ensembl Protein Viewer:ENSMUSP00000099828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102767Re-query CCDS DB by Protein ID:ENSMUSP00000099828
Original member Current member EBI ENSMUST00000102768.7 ENSMUSP00000099829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102768.7Link to Ensembl Protein Viewer:ENSMUSP00000099829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102768Re-query CCDS DB by Protein ID:ENSMUSP00000099829
Original member Current member EBI ENSMUST00000165313.1 ENSMUSP00000126129.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165313.1Link to Ensembl Protein Viewer:ENSMUSP00000126129.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165313Re-query CCDS DB by Protein ID:ENSMUSP00000126129
Original member Current member NCBI NM_001141981.2 NP_001135453.1 Accepted alive Link to Nucleotide Sequence:NM_001141981.2Link to Protein Sequence:NP_001135453.1Re-query CCDS DB by Nucleotide ID:NM_001141981Re-query CCDS DB by Protein ID:NP_001135453Link to BLAST:NP_001135453.1
Original member Current member NCBI NM_001141982.2 NP_001135454.1 Accepted alive Link to Nucleotide Sequence:NM_001141982.2Link to Protein Sequence:NP_001135454.1Re-query CCDS DB by Nucleotide ID:NM_001141982Re-query CCDS DB by Protein ID:NP_001135454Link to BLAST:NP_001135454.1
Original member Current member NCBI NM_001355604.1 NP_001342533.1 Accepted alive Link to Nucleotide Sequence:NM_001355604.1Link to Protein Sequence:NP_001342533.1Re-query CCDS DB by Nucleotide ID:NM_001355604Re-query CCDS DB by Protein ID:NP_001342533Link to BLAST:NP_001342533.1
Original member Current member NCBI NM_001355606.1 NP_001342535.1 Accepted alive Link to Nucleotide Sequence:NM_001355606.1Link to Protein Sequence:NP_001342535.1Re-query CCDS DB by Nucleotide ID:NM_001355606Re-query CCDS DB by Protein ID:NP_001342535Link to BLAST:NP_001342535.1
Original member Current member NCBI NM_001355607.1 NP_001342536.1 Accepted alive Link to Nucleotide Sequence:NM_001355607.1Link to Protein Sequence:NP_001342536.1Re-query CCDS DB by Nucleotide ID:NM_001355607Re-query CCDS DB by Protein ID:NP_001342536Link to BLAST:NP_001342536.1
Original member Current member NCBI NM_030243.5 NP_084519.1 Accepted alive Link to Nucleotide Sequence:NM_030243.5Link to Protein Sequence:NP_084519.1Re-query CCDS DB by Nucleotide ID:NM_030243Re-query CCDS DB by Protein ID:NP_084519Link to BLAST:NP_084519.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135453.1 343 Q99J64 343 100% 0 0
NP_001135454.1 343 Q99J64 343 100% 0 0
NP_001342533.1 343 Q99J64 343 100% 0 0
NP_001342535.1 343 Q99J64 343 100% 0 0
NP_001342536.1 343 Q99J64 343 100% 0 0
NP_084519.1 343 Q99J64 343 100% 0 0

Chromosomal Locations for CCDS 16030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 51925176 51925934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51926681 51926760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51929660 51929849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51932400 51932402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGCATCAGCGTGGAAGGTCAAAGATCCTACAGTTGCTGAGAGAACAGTTGTAGTCTCTGGACTTCCAG
TTGGCCTTTTAAAGGACCAGTTAGTGAAGTGCTACTTCCAAGACGAGGGTGGACATGTGGAAGAGGTGAT
ATATCCATCAAAATCCAAAGGAGTTGCGTATATCATCTTCAAGGAAAAGAAAGTTGCACAAGACTTCATC
AGACAAAAGAAACACCCTCCAGGCTCAGAGCCTCGGCTCACAGTCTCTCACTTCAGTGAAAAGGTCTTCA
ACTATGTGATGGCCATTCTTGATCTGTCTGTTTTTCGCACTCAAATTGAGCTAGAAAGCCTAGTAGTGGA
CCTGAAAAAGAAAATCCCAACTTTAAACTTTAGCCCATTGGGACCCAGTGGGAAAATCTCTGTGCAAGGT
TCATTTCTGGCCATCATGAAGCTCAAACAGGCTTTGATATCAAAAGCCATTTCCCCTTTAGAAAACAACA
GGAAAGATGCTGGTGAAAGGAGAAACTGGAATGGAGAGAACCCTAGAAGGATCCTGCAGAAAAGGGAGAA
CTCGGCGTCGATACTTGGGACCTTTGTAGCTGAGCCTGCCGGCAGCCCAGAAACACTTGTGCTTGACACA
GACATTTTCCTTTATCTGAAACACAAGTGTGAGTTTTATCATCTAACACTGAGCAAATACCATGTCCTGT
GTCAGGAGAGGGTGGATGGTGACGTCACTACCATTTGTCTACAAGACGCCCAGGATGGGTCTTGCTCTGG
CAGCGTCAGACATGTGAAAGAATTCATTGAAGAGTGTGCCCAGGAGTTCCACCTTGAGCTCAGAAAAGAG
CTACTGGTTTTGGAAGGAATGGGAGATAGAGAGAAAAGAAACATTAGGCAGGCTTTAGAAGAACTGGGTG
GCAGATATCCTAGAGTTTTGACCAACGTTCACAGCACACATATTGATCTTATAGGACCTCCTTCCGACAC
ATACCTATTTAAGACACAGCTCATGAAATCTGCGGGGCAAAAGGTCACTTGA

Translation (343 aa):
MASAWKVKDPTVAERTVVVSGLPVGLLKDQLVKCYFQDEGGHVEEVIYPSKSKGVAYIIFKEKKVAQDFI
RQKKHPPGSEPRLTVSHFSEKVFNYVMAILDLSVFRTQIELESLVVDLKKKIPTLNFSPLGPSGKISVQG
SFLAIMKLKQALISKAISPLENNRKDAGERRNWNGENPRRILQKRENSASILGTFVAEPAGSPETLVLDT
DIFLYLKHKCEFYHLTLSKYHVLCQERVDGDVTTICLQDAQDGSCSGSVRHVKEFIEECAQEFHLELRKE
LLVLEGMGDREKRNIRQALEELGGRYPRVLTNVHSTHIDLIGPPSDTYLFKTQLMKSAGQKVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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