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Report for CCDS1418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1418.1 Public Homo sapiens 1 RNPEP 24 110 108 CCDS HistoryNCBI Gene:6051Re-query CCDS DB by CCDS ID:1418.1Re-query CCDS DB by GeneID:6051See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1418.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295640.9 ENSP00000295640.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295640.9Link to Ensembl Protein Viewer:ENSP00000295640.4Re-query CCDS DB by Nucleotide ID:ENST00000295640Re-query CCDS DB by Protein ID:ENSP00000295640
Original member Current member NCBI NM_020216.4 NP_064601.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020216.4Link to Protein Sequence:NP_064601.3Re-query CCDS DB by Nucleotide ID:NM_020216Re-query CCDS DB by Protein ID:NP_064601Link to BLAST:NP_064601.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064601.3 650 Q9H4A4 650 100% 0 0

Chromosomal Locations for CCDS 1418.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201982667 201983113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201988904 201989044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201989383 201989531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201996147 201996263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201997319 201997554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201999902 202000015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202001376 202001488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202001659 202001767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202003237 202003461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202004354 202004496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202005558 202005716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGGCGAGCGGCGAGCATTCCCCCGGCAGCGGCGCGGCCCGGCGGCCGCTGCACTCCGCGCAGGCTGTGG
ACGTGGCCTCGGCCTCCAACTTCCGGGCCTTTGAGCTGCTGCACTTGCACCTGGACCTGCGGGCTGAGTT
CGGGCCTCCAGGGCCCGGCGCAGGGAGCCGGGGGCTGAGCGGCACCGCGGTCCTGGACCTGCGCTGCCTG
GAGCCCGAGGGCGCCGCCGAGCTGCGGCTGGACTCGCACCCGTGCCTGGAGGTGACGGCGGCGGCGCTGC
GGCGGGAGCGGCCCGGCTCGGAGGAGCCGCCTGCGGAGCCCGTGAGCTTCTACACGCAGCCCTTCTCGCA
CTATGGCCAGGCCCTGTGCGTGTCCTTCCCGCAGCCCTGCCGCGCCGCCGAGCGCCTCCAGGTGCTGCTC
ACCTACCGCGTCGGGGAGGGACCCGGGGTTTGCTGGTTGGCTCCCGAGCAGACAGCAGGAAAGAAGAAGC
CCTTCGTGTACACCCAGGGCCAGGCTGTCCTAAACCGGGCCTTCTTCCCTTGCTTCGACACGCCTGCTGT
TAAATACAAGTATTCAGCTCTTATTGAGGTCCCAGATGGCTTCACAGCTGTGATGAGTGCTAGCACCTGG
GAGAAGAGAGGTCCAAATAAGTTCTTCTTCCAGATGTGTCAGCCCATCCCCTCCTATCTGATAGCTTTGG
CCATCGGAGATCTGGTTTCGGCTGAAGTTGGACCCAGGAGCCGGGTGTGGGCTGAGCCCTGCCTGATTGA
TGCTGCCAAGGAGGAGTACAACGGGGTGATAGAAGAATTTTTGGCAACAGGAGAGAAGCTTTTTGGACCT
TATGTTTGGGGAAGGTATGACTTGCTCTTCATGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACCCTT
GTCTGACCTTTGTCACCCCCTGCCTGCTAGCTGGGGACCGCTCCTTGGCAGATGTCATCATCCATGAGAT
CTCCCACAGTTGGTTTGGGAACCTGGTCACCAACGCCAACTGGGGTGAATTCTGGCTCAATGAAGGTTTC
ACCATGTACGCCCAGAGGAGGATCTCCACCATCCTCTTTGGCGCTGCGTACACCTGCTTGGAGGCTGCAA
CGGGGCGGGCTCTGCTGCGTCAGCACATGGACATCACTGGAGAGGAAAACCCACTCAACAAGCTCCGCGT
GAAGATTGAACCAGGCGTTGACCCGGACGACACCTATAATGAGACCCCCTACGAGAAAGGTTTCTGCTTT
GTTTCATACCTGGCCCACTTGGTGGGTGATCAGGATCAGTTTGACAGTTTTCTCAAGGCCTATGTGCATG
AATTCAAATTCCGAAGCATCTTAGCCGATGACTTTCTGGACTTCTACTTGGAATATTTCCCTGAGCTTAA
GAAAAAGAGAGTGGATATCATTCCAGGTTTTGAGTTTGATCGATGGCTGAATACCCCCGGCTGGCCCCCG
TACCTCCCTGATCTCTCCCCTGGGGACTCACTCATGAAGCCTGCTGAAGAGCTAGCCCAACTGTGGGCAG
CCGAGGAGCTGGACATGAAGGCCATTGAAGCCGTGGCCATCTCTCCCTGGAAGACCTACCAGCTGGTCTA
CTTCCTGGATAAGATCCTCCAGAAATCCCCTCTCCCTCCTGGGAATGTGAAAAAACTTGGAGACACATAC
CCAAGTATCTCAAATGCCCGGAATGCAGAGCTCCGGCTGCGATGGGGCCAAATCGTCCTTAAGAACGACC
ACCAGGAAGATTTCTGGAAAGTGAAGGAGTTCCTGCATAACCAGGGGAAGCAGAAGTATACACTTCCGCT
GTACCACGCAATGATGGGTGGCAGTGAGGTGGCCCAGACCCTCGCCAAGGAGACTTTTGCATCCACCGCC
TCCCAGCTCCACAGCAATGTTGTCAACTATGTCCAGCAGATCGTGGCACCCAAGGGCAGTTAG

Translation (650 aa):
MASGEHSPGSGAARRPLHSAQAVDVASASNFRAFELLHLHLDLRAEFGPPGPGAGSRGLSGTAVLDLRCL
EPEGAAELRLDSHPCLEVTAAALRRERPGSEEPPAEPVSFYTQPFSHYGQALCVSFPQPCRAAERLQVLL
TYRVGEGPGVCWLAPEQTAGKKKPFVYTQGQAVLNRAFFPCFDTPAVKYKYSALIEVPDGFTAVMSASTW
EKRGPNKFFFQMCQPIPSYLIALAIGDLVSAEVGPRSRVWAEPCLIDAAKEEYNGVIEEFLATGEKLFGP
YVWGRYDLLFMPPSFPFGGMENPCLTFVTPCLLAGDRSLADVIIHEISHSWFGNLVTNANWGEFWLNEGF
TMYAQRRISTILFGAAYTCLEAATGRALLRQHMDITGEENPLNKLRVKIEPGVDPDDTYNETPYEKGFCF
VSYLAHLVGDQDQFDSFLKAYVHEFKFRSILADDFLDFYLEYFPELKKKRVDIIPGFEFDRWLNTPGWPP
YLPDLSPGDSLMKPAEELAQLWAAEELDMKAIEAVAISPWKTYQLVYFLDKILQKSPLPPGNVKKLGDTY
PSISNARNAELRLRWGQIVLKNDHQEDFWKVKEFLHNQGKQKYTLPLYHAMMGGSEVAQTLAKETFASTA
SQLHSNVVNYVQQIVAPKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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