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Report for CCDS12579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12579.1 Public Homo sapiens 19 B9D2 24 110 108 CCDS HistoryNCBI Gene:80776Re-query CCDS DB by CCDS ID:12579.1Re-query CCDS DB by GeneID:80776See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12579.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243578.8 ENSP00000243578.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000243578.8Link to Ensembl Protein Viewer:ENSP00000243578.2Re-query CCDS DB by Nucleotide ID:ENST00000243578Re-query CCDS DB by Protein ID:ENSP00000243578
Original member Current member EBI ENST00000675972.1 ENSP00000501911.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675972.1Link to Ensembl Protein Viewer:ENSP00000501911.1Re-query CCDS DB by Nucleotide ID:ENST00000675972Re-query CCDS DB by Protein ID:ENSP00000501911
Original member Current member NCBI NM_030578.4 NP_085055.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030578.4Link to Protein Sequence:NP_085055.2Re-query CCDS DB by Nucleotide ID:NM_030578Re-query CCDS DB by Protein ID:NP_085055Link to BLAST:NP_085055.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085055.2 175 Q9BPU9 175 100% 0 0

Chromosomal Locations for CCDS 12579.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41354700 41355013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41357897 41358022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41363432 41363519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGCTGAGGTGCACGTGATCGGGCAGATCATAGGGGCCAGCGGTTTCTCGGAAAGTAGCCTCTTCTGCA
AGTGGGGCATTCACACAGGGGCGGCATGGAAGCTCCTGTCAGGCGTGCGGGAGGGCCAAACGCAAGTGGA
CACCCCGCAGATAGGGGACATGGCTTACTGGTCCCACCCCATCGACCTGCACTTCGCCACCAAAGGTCTT
CAAGGCTGGCCCCGGCTCCATTTCCAGGTGTGGTCCCAGGACAGCTTTGGCCGCTGCCAGCTTGCAGGCT
ATGGATTTTGCCATGTGCCCAGTAGCCCGGGCACCCACCAGCTGGCCTGCCCCACGTGGCGGCCCCTGGG
CAGTTGGCGAGAACAGTTGGCACGGGCTTTCGTGGGTGGTGGGCCGCAGCTGCTGCATGGGGACACCATC
TACAGTGGGGCCGACCGCTATCGCCTGCACACAGCTGCTGGTGGCACCGTGCACCTGGAGATCGGCCTGC
TGCTCCGCAACTTCGACCGCTACGGCGTGGAGTGCTGA

Translation (175 aa):
MAEVHVIGQIIGASGFSESSLFCKWGIHTGAAWKLLSGVREGQTQVDTPQIGDMAYWSHPIDLHFATKGL
QGWPRLHFQVWSQDSFGRCQLAGYGFCHVPSSPGTHQLACPTWRPLGSWREQLARAFVGGGPQLLHGDTI
YSGADRYRLHTAAGGTVHLEIGLLLRNFDRYGVEC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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