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Report for CCDS12504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12504.1 Public Homo sapiens 19 ZNF570 24 110 108 CCDS HistoryNCBI Gene:148268Re-query CCDS DB by CCDS ID:12504.1Re-query CCDS DB by GeneID:148268See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330173.6 ENSP00000331540.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330173.6Link to Ensembl Protein Viewer:ENSP00000331540.1Re-query CCDS DB by Nucleotide ID:ENST00000330173Re-query CCDS DB by Protein ID:ENSP00000331540
Original member Current member NCBI NM_001321991.3 NP_001308920.1 Accepted alive Link to Nucleotide Sequence:NM_001321991.3Link to Protein Sequence:NP_001308920.1Re-query CCDS DB by Nucleotide ID:NM_001321991Re-query CCDS DB by Protein ID:NP_001308920Link to BLAST:NP_001308920.1
Original member Current member NCBI NM_144694.5 NP_653295.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144694.5Link to Protein Sequence:NP_653295.1Re-query CCDS DB by Nucleotide ID:NM_144694Re-query CCDS DB by Protein ID:NP_653295Link to BLAST:NP_653295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308920.1 536 Q96NI8-1 536 100% 0 0
NP_653295.1 536 Q96NI8-1 536 100% 0 0

Chromosomal Locations for CCDS 12504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 37470355 37470387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37475881 37476007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37476339 37476434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37483879 37485233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGCTGTTGGGCTTCTTAAAGCCATGTACCAGGAGTTGGTGACCTTCAGAGATGTGGCTGTAGACTTCT
CCCAAGAGGAATGGGATTGTCTGGATTCTTCTCAAAGACATCTGTACAGTAATGTGATGCTAGAGAACTA
CAGGATCTTGGTATCACTGGGACTTTGCTTTTCCAAACCAAGTGTGATATTATTGTTGGAACAAGGAAAA
GCACCCTGGATGGTGAAGAGAGAGCTGACAAAAGGCTTGTGCTCAGGCTGGGAGCCTATATGTGAGACTG
AAGAATTAACCCCAAAGCAGGATTTTTATGAAGAACATCAATCCCAGAAGATAATAGAAACACTTACAAG
CTATAACCTTGAATACTCCAGTTTGAGAGAAGAGTGGAAATGTGAGGGCTATTTTGAAAGGCAACCAGGT
AATCAGAAGGCGTGTTTCAAGGAAGAGATAATCACTCATGAAGAACCCCTTTTTGATGAGAGAGAACAAG
AATATAAATCTTGGGGAAGTTTTCATCAGAACCCACTGCTTTGTACACAAAAGATAATCCCCAAAGAGGA
GAAAGTACATAAACATGACACACAAAAGAGAAGCTTTAAAAAAAATTTAATGGCTATTAAGCCCAAGAGT
GTCTGTGCAGAGAAGAAACTTTTGAAATGTAATGACTGTGAAAAAGTCTTCAGCCAGAGTTCATCCCTTA
CTCTTCATCAAAGAATTCATACTGGAGAGAAACCCTATAAATGTATAGAGTGTGGAAAAGCCTTCAGCCA
GAGATCAAATCTTGTTCAACATCAGAGGATTCATACTGGAGAAAAACCCTATGAATGTAAGGAATGTAGG
AAAGCCTTCAGTCAGAATGCACACCTAGTTCAACATCTGCGAGTTCATACTGGAGAAAAACCTTACGAAT
GTAAGGTATGTCGAAAAGCCTTCAGCCAGTTTGCCTACCTTGCTCAACATCAGAGAGTTCACACGGGAGA
GAAACCCTATGAATGTATCGAATGTGGGAAAGCATTTAGCAACAGATCATCCATTGCTCAACACCAGAGA
GTTCATACAGGAGAGAAACCCTATGAATGTAATGTCTGTGGGAAAGCATTTAGCCTTCGTGCATACCTTA
CTGTACATCAGAGAATACATACTGGAGAGAGACCCTATGAATGTAAGGAATGTGGGAAGGCCTTTAGCCA
GAATTCACACCTTGCTCAACATCAGAGAATTCATACTGGAGAAAAACCTTATAAGTGTCAGGAATGTAGG
AAAGCATTCAGCCAGATTGCCTACCTTGCTCAGCATCAAAGAGTTCATACTGGAGAGAAACCCTATGAAT
GTATTGAATGTGGGAAGGCTTTTAGCAATGACTCGTCCCTTACTCAACATCAGCGAGTTCATACTGGAGA
GAAACCTTATGAATGTACTGTTTGTGGAAAGGCTTTTAGTTACTGTGGATCCCTTGCCCAACATCAGAGA
ATTCATACTGGAGAGAGACCCTATGAATGTAAGGAATGCAAAAAAACCTTCAGGCAGCATGCACACCTTG
CTCATCACCAGAGAATTCACATTGGGGAGTCACTGTCACCACCCAACCCAGTCAATCACCAAGTCCTATA
G

Translation (536 aa):
MAVGLLKAMYQELVTFRDVAVDFSQEEWDCLDSSQRHLYSNVMLENYRILVSLGLCFSKPSVILLLEQGK
APWMVKRELTKGLCSGWEPICETEELTPKQDFYEEHQSQKIIETLTSYNLEYSSLREEWKCEGYFERQPG
NQKACFKEEIITHEEPLFDEREQEYKSWGSFHQNPLLCTQKIIPKEEKVHKHDTQKRSFKKNLMAIKPKS
VCAEKKLLKCNDCEKVFSQSSSLTLHQRIHTGEKPYKCIECGKAFSQRSNLVQHQRIHTGEKPYECKECR
KAFSQNAHLVQHLRVHTGEKPYECKVCRKAFSQFAYLAQHQRVHTGEKPYECIECGKAFSNRSSIAQHQR
VHTGEKPYECNVCGKAFSLRAYLTVHQRIHTGERPYECKECGKAFSQNSHLAQHQRIHTGEKPYKCQECR
KAFSQIAYLAQHQRVHTGEKPYECIECGKAFSNDSSLTQHQRVHTGEKPYECTVCGKAFSYCGSLAQHQR
IHTGERPYECKECKKTFRQHAHLAHHQRIHIGESLSPPNPVNHQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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