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Report for CCDS11138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11138.1 Public Homo sapiens 17 SLC25A35 24 110 108 CCDS HistoryNCBI Gene:399512Re-query CCDS DB by CCDS ID:11138.1Re-query CCDS DB by GeneID:399512See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380067.6 ENSP00000369407.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380067.6Link to Ensembl Protein Viewer:ENSP00000369407.2Re-query CCDS DB by Nucleotide ID:ENST00000380067Re-query CCDS DB by Protein ID:ENSP00000369407
Original member Current member EBI ENST00000579192.5 ENSP00000462395.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000579192.5Link to Ensembl Protein Viewer:ENSP00000462395.1Re-query CCDS DB by Nucleotide ID:ENST00000579192Re-query CCDS DB by Protein ID:ENSP00000462395
Original member Current member EBI ENST00000580340.5 ENSP00000464071.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580340.5Link to Ensembl Protein Viewer:ENSP00000464071.1Re-query CCDS DB by Nucleotide ID:ENST00000580340Re-query CCDS DB by Protein ID:ENSP00000464071
Original member Current member NCBI NM_001320871.2 NP_001307800.1 Accepted alive Link to Nucleotide Sequence:NM_001320871.2Link to Protein Sequence:NP_001307800.1Re-query CCDS DB by Nucleotide ID:NM_001320871Re-query CCDS DB by Protein ID:NP_001307800Link to BLAST:NP_001307800.1
Original member Current member NCBI NM_001320872.2 NP_001307801.1 Accepted alive Link to Nucleotide Sequence:NM_001320872.2Link to Protein Sequence:NP_001307801.1Re-query CCDS DB by Nucleotide ID:NM_001320872Re-query CCDS DB by Protein ID:NP_001307801Link to BLAST:NP_001307801.1
Original member Current member NCBI NM_201520.3 NP_958928.1 Accepted alive Link to Nucleotide Sequence:NM_201520.3Link to Protein Sequence:NP_958928.1Re-query CCDS DB by Nucleotide ID:NM_201520Re-query CCDS DB by Protein ID:NP_958928Link to BLAST:NP_958928.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307800.1 295 Q3KQZ1-4 295 100% 0 0
NP_001307801.1 295 Q3KQZ1-4 295 100% 0 0
NP_958928.1 295 Q3KQZ1-4 295 100% 0 0

Chromosomal Locations for CCDS 11138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8289616 8289643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8289854 8289984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8290842 8290976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8291333 8291485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8292523 8292588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8294433 8294807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGACTTCTTGATGAGTGGCCTGGCAGCCTGCGGGGCCTGTGTATTCACCAATCCCCTGGAGGTGGTGA
AGACCAGGATGCAGTTGCAAGGAGAACTGCAGGCCCCTGGCACATACCAGCGGCACTACCGAAATGTCTT
CCATGCCTTCATCACCATCGGCAAGGTGGATGGCCTTGCTGCCCTGCAGAAAGGCCTGGCCCCCGCCCTC
TTGTACCAGTTCCTGATGAATGGCATCCGACTGGGCACCTATGGGCTGGCTGAGGCTGGGGGCTACCTGC
ACACAGCCGAAGGCACCCACAGTCCTGCCCGCAGCGCAGCAGCTGGGGCCATGGCTGGGGTCATGGGAGC
CTACTTGGGGAGCCCCATCTACATGGTGAAGACACACCTGCAGGCACAGGCAGCCTCAGAAATTGCTGTA
GGGCACCAGTATAAGCATCAGGGCATGTTTCAGGCGCTAACCGAGATTGGCCAGAAACATGGTCTGGTGG
GGTTATGGCGTGGGGCTCTGGGCGGCCTGCCCCGAGTTATCGTCGGTTCCTCCACCCAGCTGTGCACCTT
CTCATCCACCAAGGACCTCCTGAGCCAGTGGGAGATCTTTCCTCCCCAGAGCTGGAAGTTGGCGCTGGTG
GCTGCCATGATGAGTGGCATTGCAGTTGTCTTGGCCATGGCACCCTTTGATGTGGCCTGCACAAGGCTCT
ACAACCAGCCCACAGATGCACAGGGCAAGAACCGAGTCCCCAAGTTCTCAGCAACATCATGCAGTGCTTC
AGCGCCTTTACTGGGGACCAAAGATGTTAGGATCGTGAAGGGTCAGACTGGTCACCAGCTGTTCAAAGTC
ACCCAGGCTCCAGGGTGCAGCCCGATTCTCCTGGGAACCCAGTCATGA

Translation (295 aa):
MDFLMSGLAACGACVFTNPLEVVKTRMQLQGELQAPGTYQRHYRNVFHAFITIGKVDGLAALQKGLAPAL
LYQFLMNGIRLGTYGLAEAGGYLHTAEGTHSPARSAAAGAMAGVMGAYLGSPIYMVKTHLQAQAASEIAV
GHQYKHQGMFQALTEIGQKHGLVGLWRGALGGLPRVIVGSSTQLCTFSSTKDLLSQWEIFPPQSWKLALV
AAMMSGIAVVLAMAPFDVACTRLYNQPTDAQGKNRVPKFSATSCSASAPLLGTKDVRIVKGQTGHQLFKV
TQAPGCSPILLGTQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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