NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10439.1 Public Homo sapiens 16 IFT140 24 110 108 CCDS HistoryNCBI Gene:9742Re-query CCDS DB by CCDS ID:10439.1Re-query CCDS DB by GeneID:9742See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426508.7 ENSP00000406012.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000426508.7Link to Ensembl Protein Viewer:ENSP00000406012.2Re-query CCDS DB by Nucleotide ID:ENST00000426508Re-query CCDS DB by Protein ID:ENSP00000406012
Original member Current member NCBI NM_014714.4 NP_055529.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014714.4Link to Protein Sequence:NP_055529.2Re-query CCDS DB by Nucleotide ID:NM_014714Re-query CCDS DB by Protein ID:NP_055529Link to BLAST:NP_055529.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055529.2 1462 Q96RY7-1 1462 100% 0 0

Chromosomal Locations for CCDS 10439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1510944 1511150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1518216 1518357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1519881 1520047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1520131 1520343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1520602 1520808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1523518 1523700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1523828 1523956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1524552 1524695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1524784 1524916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1525231 1525326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1525887 1526077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1526619 1526796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1557935 1558134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1561985 1562116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1563997 1564162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1566161 1566291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1568217 1568334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1571407 1571534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1580759 1580850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1583314 1583386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1584217 1584420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1586130 1586275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1587198 1587304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1587933 1588024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1589605 1589780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1592176 1592318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1592467 1592588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1602370 1602591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1607120 1607266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4389 nt):
ATGGCCCTCTATTATGACCACCAGATAGAAGCCCCGGATGCAGCAGGGTCACCCTCATTTATCAGCTGGC
ACCCTGTCCATCCATTCTTGGCAGTTGCTTACATCAGCACAACCTCAACAGGCAGCGTGGATATTTACCT
GGAGCAAGGGGAGTGCGTGCCAGATACACACGTCGAGAGGCCGTTCCGGGTTGCTTCCCTGTGCTGGCAC
CCGACGCGGCTGGTGCTGGCTGTGGGCTGGGAGACTGGAGAAGTGACGGTGTTTAACAAGCAGGACAAGG
AGCAGCACACGATGCCCCTGACACACACAGCCGACATCACCGTGCTCCGTTGGAGCCCCAGTGGAAACTG
CCTGCTGTCTGGGGACAGGCTTGGTGTCTTGCTCTTGTGGAGGTTGGACCAAAGGGGCCGAGTGCAAGGG
ACGCCTCTGCTGAAACACGAGTATGGGAAACACCTCACGCACTGCATCTTCCGGCTCCCCCCTCCTGGCG
AGGACCTGGTTCAGTTGGCAAAGGCAGCTGTGAGCGGTGATGAGAAAGCCCTGGACATGTTTAACTGGAA
GAAGAGCAGTTCTGGAAGTTTGCTGAAGATGGGGTCTCACGAGGGGCTGTTGTTCTTTGTCAGTCTGATG
GACGGGACAGTGCACTATGTGGATGAGAAGGGCAAGACCACTCAGGTGGTGTCCGCAGACAGCACGATTC
AGATGCTGTTCTACATGGAGAAGAGGGAGGCACTGGTGGTGGTCACAGAGAACCTCCGGCTGTCCCTGTA
CACGGTGCCTCCTGAGGGCAAAGCAGAAGAAGTGATGAAGGTCAAGCTGAGCGGGAAAACCGGCCGCCGG
GCAGACATCGCTTTGATTGAAGGCAGCCTTCTCGTGATGGCCGTCGGGGAGGCTGCCCTCAGATTCTGGG
ACATAGAACGAGGAGAGAATTATATACTGAGTCCAGATGAGAAGTTTGGCTTTGAGAAAGGAGAGAATAT
GAACTGTGTGTGTTACTGTAAAGTCAAAGGTCTTCTGGCCGCTGGTACCGACAGAGGGCGAGTAGCCATG
TGGAGGAAAGTACCAGACTTCCTGGGCAGCCCCGGGGCAGAGGGCAAGGACAGGTGGGCCCTTCAGACCC
CTACCGAGCTCCAAGGAAACATCACGCAAATCCAGTGGGGTTCCAGGAAGAACCTGCTGGCAGTGAACAG
CGTCATCTCCGTGGCCATCCTCAGCGAGCGGGCCATGTCGTCACACTTCCACCAGCAAGTGGCCGCCATG
CAGGTCTCCCCGAGTCTGCTGAATGTGTGCTTCCTGTCCACGGGGGTCGCACACAGCCTGCGCACCGACA
TGCACATCAGTGGAGTGTTTGCCACCAAGGATGCTGTCGCAGTCTGGAACGGAAGGCAGGTGGCGATCTT
CGAGCTTTCTGGAGCCGCGATACGGAGTGCAGGGACCTTCTTGTGTGAGACGCCTGTGTTAGCAATGCAT
GAAGAAAACGTTTACACGGTGGAGTCAAACCGAGTTCAAGTTCGAACCTGGCAGGGGACTGTCAAACAAC
TCCTCCTTTTCTCGGAGACTGAGGGGAATCCCTGCTTCTTGGACATCTGTGGGAATTTCCTGGTTGTAGG
GACAGACTTGGCTCACTTTAAAAGCTTTGATCTTTCCCGAAGAGAGGCCAAAGCACACTGTAGCTGCAGG
AGCCTGGCGGAGCTGGTCCCTGGGGTGGGGGGCATCGCTTCTCTGCGGTGCAGCAGCAGCGGGAGCACCA
TCAGCATCCTCCCCAGCAAGGCTGACAACAGCCCTGATTCCAAAATCTGCTTCTACGATGTTGAAATGGA
CACAGTGACCGTCTTTGACTTCAAGACTGGACAAATTGATCGGAGAGAGACGCTGTCCTTTAATGAGCAA
GAGACTAATAAGAGCCACCTCTTTGTGGATGAGGGACTGAAAAATTATGTTCCCGTGAACCACTTCTGGG
ACCAGAGTGAGCCCCGGCTGTTTGTATGCGAAGCCGTGCAGGAGACGCCGCGCTCCCAGCCTCAGTCTGC
AAACGGGCAGCCCCAAGATGGGCGCGCTGGCCCTGCGGCAGATGTTTTGATCCTGTCCTTCTTCATTTCC
GAAGAGCACGGCTTCCTGCTTCATGAGAGCTTCCCCCGGCCTGCCACCTCCCACAGTCTCCTGGGGATGG
AAGTGCCTTATTACTACTTCACAAGAAAGCCCGAAGAAGCAGACAGAGAAGACGAGGTGGAGCCTGGGTG
CCACCACATCCCTCAGATGGTGTCCAGGAGACCCCTGCGAGACTTTGTGGGGCTGGAGGACTGCGACAAG
GCCACCCGGGACGCCATGCTCCACTTCAGCTTCTTTGTCACCATAGGAGACATGGACGAAGCCTTCAAAT
CCATCAAGCTCATCAAAAGTGAGGCCGTCTGGGAGAACATGGCGCGCATGTGCGTGAAGACCCAGCGGCT
GGACGTGGCCAAGGTGTGCCTGGGGAACATGGGCCATGCCCGCGGGGCCCGAGCGCTGCGTGAGGCGGAG
CAGGAGCCGGAGCTAGAGGCCCGCGTGGCCGTGCTGGCCACGCAGCTGGGCATGCTGGAGGACGCCGAGC
AGCTGTACAGGAAGTGCAAGCGCCACGACCTCCTGAACAAGTTCTACCAGGCTGCGGGCCGGTGGCAGGA
GGCCCTCCAGGTAGCCGAGCACCACGATCGCGTGCACCTGCGCAGCACCTACCACCGCTATGCCGGGCAC
CTGGAGGCCAGCGCCGACTGCAGCCGGGCCCTCAGTTACTACGAGAAGTCGGACACGCACCGCTTCGAGG
TGCCCAGGATGCTGTCGGAGGACCTGCCGTCCCTGGAGCTCTACGTGAATAAAATGAAGGATAAGACCCT
GTGGCGGTGGTGGGCGCAGTACCTGGAGAGCCAGGGCGAGATGGACGCCGCGCTGCACTACTACGAGCTG
GCCCGGGACCACTTCTCCCTGGTCCGCATCCACTGCTTCCAGGGCAATGTCCAGAAGGCTGCGCAAATAG
CCAACGAGACAGGAAACCTGGCGGCCTCCTACCACCTCGCCCGCCAGTACGAGAGCCAGGAGGAGGTCGG
GCAGGCGGTGCACTTCTACACCCGGGCACAGGCCTTCAAGAATGCCATCCGCCTGTGCAAGGAGAACGGC
CTGGACGACCAGCTCATGAACTTGGCCCTGCTGAGCTCCCCCGAGGACATGATCGAGGCGGCCCGATACT
ACGAGGAGAAGGGCGTGCAGATGGACAGGGCGGTCATGCTGTACCACAAGGCTGGCCACTTCTCCAAGGC
CCTGGAGCTGGCCTTTGCCACCCAGCAGTTTGTGGCCCTACAGCTCATAGCAGAGGACCTGGATGAGACG
TCAGACCCTGCGCTCCTGGCCCGCTGCTCCGACTTCTTCATCGAGCACAGTCAGTACGAGAGGGCGGTAG
AGCTGCTGCTGGCTGCCAGGAAGTATCAGGAAGCCCTGCAGCTGTGCCTGGGGCAGAACATGAGCATCAC
CGAGGAGATGGCGGAAAAGATGACCGTGGCCAAGGACTCCTCGGACCTGCCTGAGGAGTCGCGGCGGGAG
CTGCTGGAGCAGATAGCAGACTGCTGCATGCGCCAGGGCAGCTACCACCTGGCCACCAAGAAGTACACGC
AGGCCGGCAACAAGCTGAAGGCCATGAGGGCGCTGCTCAAATCCGGAGACACGGAGAAAATCACGTTCTT
CGCGAGCGTGTCCAGGCAGAAGGAAATCTACATCATGGCTGCTAACTACCTGCAGTCCCTGGACTGGCGG
AAGGAGCCGGAGATCATGAAGAACATCATCGGCTTCTACACCAAGGGGCGGGCCCTGGACCTCCTGGCTG
GCTTTTATGACGCTTGTGCCCAGGTGGAGATTGATGAATACCAGAACTACGACAAAGCCCACGGGGCGCT
GACCGAGGCCTACAAGTGCCTGGCCAAGGCCAAGGCCAAGAGCCCCCTGGACCAGGAGACCAGGCTGGCG
CAGCTGCAGAGCAGGATGGCACTGGTGAAGAGGTTCATCCAGGCCCGCAGGACGTACACAGAGGACCCCA
AGGAGTCCATCAAGCAGTGTGAGCTGCTCCTGGAGGAACCAGACCTGGACAGCACCATCCGCATCGGGGA
CGTCTATGGCTTCCTGGTGGAGCACTACGTGCGGAAGGAGGAATACCAGACGGCCTACAGATTCCTGGAG
GAGATGCGGCGGCGGCTTCCCTTGGCCAACATGTCCTACTACGTGAGCCCGCAGGCCGTGGACGCCGTGC
ACCGGGGGCTGGGTCTCCCACTGCCACGCACCGTCCCCGAGCAGGTCCGCCACAACAGCATGGAGGACGC
CAGGGAGCTGGACGAGGAGGTGGTGGAAGAGGCAGATGACGACCCCTGA

Translation (1462 aa):
MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVERPFRVASLCWH
PTRLVLAVGWETGEVTVFNKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGDRLGVLLLWRLDQRGRVQG
TPLLKHEYGKHLTHCIFRLPPPGEDLVQLAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLM
DGTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRR
ADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAM
WRKVPDFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNSVISVAILSERAMSSHFHQQVAAM
QVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELSGAAIRSAGTFLCETPVLAMH
EENVYTVESNRVQVRTWQGTVKQLLLFSETEGNPCFLDICGNFLVVGTDLAHFKSFDLSRREAKAHCSCR
SLAELVPGVGGIASLRCSSSGSTISILPSKADNSPDSKICFYDVEMDTVTVFDFKTGQIDRRETLSFNEQ
ETNKSHLFVDEGLKNYVPVNHFWDQSEPRLFVCEAVQETPRSQPQSANGQPQDGRAGPAADVLILSFFIS
EEHGFLLHESFPRPATSHSLLGMEVPYYYFTRKPEEADREDEVEPGCHHIPQMVSRRPLRDFVGLEDCDK
ATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAE
QEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLNKFYQAAGRWQEALQVAEHHDRVHLRSTYHRYAGH
LEASADCSRALSYYEKSDTHRFEVPRMLSEDLPSLELYVNKMKDKTLWRWWAQYLESQGEMDAALHYYEL
ARDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFKNAIRLCKENG
LDDQLMNLALLSSPEDMIEAARYYEEKGVQMDRAVMLYHKAGHFSKALELAFATQQFVALQLIAEDLDET
SDPALLARCSDFFIEHSQYERAVELLLAARKYQEALQLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRE
LLEQIADCCMRQGSYHLATKKYTQAGNKLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWR
KEPEIMKNIIGFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLAKAKAKSPLDQETRLA
QLQSRMALVKRFIQARRTYTEDPKESIKQCELLLEEPDLDSTIRIGDVYGFLVEHYVRKEEYQTAYRFLE
EMRRRLPLANMSYYVSPQAVDAVHRGLGLPLPRTVPEQVRHNSMEDARELDEEVVEEADDDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH