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Report for CCDS10232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10232.1 Public Homo sapiens 15 PAQR5 24 110 108 CCDS HistoryNCBI Gene:54852Re-query CCDS DB by CCDS ID:10232.1Re-query CCDS DB by GeneID:54852See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340965.4 ENSP00000343877.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340965.4Link to Ensembl Protein Viewer:ENSP00000343877.3Re-query CCDS DB by Nucleotide ID:ENST00000340965Re-query CCDS DB by Protein ID:ENSP00000343877
Original member Current member EBI ENST00000395407.7 ENSP00000378803.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395407.7Link to Ensembl Protein Viewer:ENSP00000378803.2Re-query CCDS DB by Nucleotide ID:ENST00000395407Re-query CCDS DB by Protein ID:ENSP00000378803
Original member Current member EBI ENST00000561153.5 ENSP00000453526.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561153.5Link to Ensembl Protein Viewer:ENSP00000453526.1Re-query CCDS DB by Nucleotide ID:ENST00000561153Re-query CCDS DB by Protein ID:ENSP00000453526
Original member Current member NCBI NM_001104554.2 NP_001098024.1 Accepted alive Link to Nucleotide Sequence:NM_001104554.2Link to Protein Sequence:NP_001098024.1Re-query CCDS DB by Nucleotide ID:NM_001104554Re-query CCDS DB by Protein ID:NP_001098024Link to BLAST:NP_001098024.1
Original member Current member NCBI NM_017705.4 NP_060175.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017705.4Link to Protein Sequence:NP_060175.3Re-query CCDS DB by Nucleotide ID:NM_017705Re-query CCDS DB by Protein ID:NP_060175Link to BLAST:NP_060175.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098024.1 330 Q9NXK6 330 100% 0 0
NP_060175.3 330 Q9NXK6 330 100% 0 0

Chromosomal Locations for CCDS 10232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 69360081 69360131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69379883 69380010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69384677 69384882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69389654 69389780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69397468 69397564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69399974 69400115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69403581 69403822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGCTGAGCCTGAAGCTCCCCAGGCTGTTTAGCATAGACCAGATACCCCAGGTGTTCCATGAGCAAGGCA
TCCTGTTCGGCTACCGCCATCCACAGAGTTCTGCCACTGCCTGCATCCTCAGCCTTTTCCAAATGACCAA
TGAGACTCTCAACATTTGGACTCACTTGCTGCCCTTCTGGTTCTTTGCATGGAGGTTTGTGACTGCACTG
TATATGACAGACATCAAGAATGACAGCTACTCCTGGCCCATGCTTGTGTACATGTGCACCAGCTGCGTGT
ACCCACTTGTGTCCAGCTGTGCGCACACCTTCAGCTCTATGTCCAAGAATGCCCGGCACATTTGCTACTT
CCTGGACTATGGTGCCGTCAACCTCTTCAGCCTGGGCTCAGCCATTGCCTACTCTGCATACACGTTCCCG
GATGCGCTCATGTGCACCACTTTCCATGACTACTACGTGGCCCTGGCTGTACTGAACACCATCCTCAGCA
CAGGCCTCTCCTGCTACTCCAGGTTTCTTGAAATCCAGAAGCCCAGACTCTGTAAGGTGATTCGTGTCCT
CGCCTTTGCTTATCCGTACACCTGGGACTCCCTCCCCATCTTCTACAGGCTATTCCTGTTCCCAGGGGAG
AGTGCACAAAATGAAGCCACCTCGTACCACCAGAAGCACATGATCATGACCCTCCTGGCCTCTTTCTTGT
ACTCTGCACATCTGCCAGAACGCCTAGCCCCTGGACGCTTTGACTACATCGGTCACAGTCACCAGCTGTT
TCACGTGTGTGTGATCCTGGCCACGCACATGCAGATGGAAGCCATACTTCTGGACAAGACTCTGAGGAAG
GAATGGCTCCTGGCCACCTCCAAGCCCTTCTCTTTCTCTCAGATAGCTGGAGCCATACTTCTGTGCATCA
TCTTCAGCCTCAGCAACATAATTTATTTCTCAGCTGCTCTGTATCGGATTCCCAAGCCAGAATTACATAA
AAAAGAAACATGA

Translation (330 aa):
MLSLKLPRLFSIDQIPQVFHEQGILFGYRHPQSSATACILSLFQMTNETLNIWTHLLPFWFFAWRFVTAL
YMTDIKNDSYSWPMLVYMCTSCVYPLVSSCAHTFSSMSKNARHICYFLDYGAVNLFSLGSAIAYSAYTFP
DALMCTTFHDYYVALAVLNTILSTGLSCYSRFLEIQKPRLCKVIRVLAFAYPYTWDSLPIFYRLFLFPGE
SAQNEATSYHQKHMIMTLLASFLYSAHLPERLAPGRFDYIGHSHQLFHVCVILATHMQMEAILLDKTLRK
EWLLATSKPFSFSQIAGAILLCIIFSLSNIIYFSAALYRIPKPELHKKET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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