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Report for CCDS1021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1021.1 Public Homo sapiens 1 LCE2A 24 110 108 CCDS HistoryNCBI Gene:353139Re-query CCDS DB by CCDS ID:1021.1Re-query CCDS DB by GeneID:353139See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1021.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368779.2 ENSP00000357768.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368779.2Link to Ensembl Protein Viewer:ENSP00000357768.1Re-query CCDS DB by Nucleotide ID:ENST00000368779Re-query CCDS DB by Protein ID:ENSP00000357768
Original member Current member NCBI NM_178428.4 NP_848515.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178428.4Link to Protein Sequence:NP_848515.1Re-query CCDS DB by Nucleotide ID:NM_178428Re-query CCDS DB by Protein ID:NP_848515Link to BLAST:NP_848515.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848515.1 106 Q5TA79 106 100% 0 0

Chromosomal Locations for CCDS 1021.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152698902 152699222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGCCCCCCAAAATGCCCACCCAAGT
GTCCTCCAAAGTGCCGACCTCAGTGCCCAGCCCCATGCCCACCTCCAGTCTCTTCCTGCTGTGGTCCCAG
CTCTGGGGGCTGCTGCGGCTCCAGCTCTGGGGGCTGCTGCAGCTCTGGGGGTGGCGGCTGCTGCCTGAGC
CACCACAGGCCCCGTCTCTTCCACCGGCACCGGCACCAGAGCCCCGATTGTTGTGAGTGTGAACCTTCTG
GGGGCTCTGGCTGCTGCCACAGCTCTGGGGACTGCTGCTGA

Translation (106 aa):
MSCQQNQQQCQPPPKCPPKCPPKCPPKCRPQCPAPCPPPVSSCCGPSSGGCCGSSSGGCCSSGGGGCCLS
HHRPRLFHRHRHQSPDCCECEPSGGSGCCHSSGDCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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