NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9740.1 Public Homo sapiens 14 RTN1 24 110 108 CCDS HistoryNCBI Gene:6252Re-query CCDS DB by CCDS ID:9740.1Re-query CCDS DB by GeneID:6252See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267484.10 ENSP00000267484.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267484.10Link to Ensembl Protein Viewer:ENSP00000267484.5Re-query CCDS DB by Nucleotide ID:ENST00000267484Re-query CCDS DB by Protein ID:ENSP00000267484
Original member Current member NCBI NM_021136.3 NP_066959.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021136.3Link to Protein Sequence:NP_066959.1Re-query CCDS DB by Nucleotide ID:NM_021136Re-query CCDS DB by Protein ID:NP_066959Link to BLAST:NP_066959.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066959.1 776 Q16799-1 776 100% 0 0

Chromosomal Locations for CCDS 9740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59596745 59596787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59603065 59603123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59603212 59603258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59603852 59603921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59605368 59605506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59607285 59607492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59726919 59727668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59745708 59746481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59870390 59870630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGGCCGCGCCGGGGGATCCGCAGGACGAGCTGCTGCCGCTGGCCGGCCCCGGGTCCCAGTGGCTCAGGC
ACCGGGGGGAGGGGGAGAACGAAGCGGTGACGCCGAAAGGGGCCACGCCGGCGCCGCAGGCTGGGGAGCC
CAGCCCGGGGTTGGGCGCCAGGGCCCGGGAAGCGGCGTCGCGGGAAGCCGGCTCGGGCCCCGCCCGGCAG
TCGCCCGTTGCCATGGAAACTGCATCCACAGGTGTGGCAGGTGTTTCCAGTGCCATGGACCACACCTTCT
CAACAACATCAAAAGATGGGGAAGGATCGTGTTACACATCTCTCATTTCTGACATCTGCTATCCACCTCA
GGAGGATTCTACATATTTTACTGGAATTCTTCAGAAGGAAAATGGCCACGTCACCATTTCAGAGAGCCCT
GAGGAGCTGGGTACACCCGGCCCCTCCTTACCAGATGTGCCTGGGATAGAGTCTCGTGGCTTATTTAGTT
CTGATTCTGGAATAGAGATGACTCCTGCAGAGTCCACGGAAGTGAACAAGATCTTAGCAGACCCTCTGGA
CCAGATGAAAGCAGAGGCCTATAAATACATTGACATAACCAGACCCGAGGAGGTGAAGCACCAAGAACAA
CATCACCCCGAGCTGGAAGATAAAGACTTGGACTTTAAGAATAAAGACACTGACATCTCAATTAAACCTG
AAGGAGTCCGTGAACCTGACAAACCAGCTCCTGTGGAGGGAAAAATCATCAAGGACCATTTATTGGAAGA
ATCCACATTTGCTCCATACATAGATGATCTCTCTGAAGAACAGCGCAGGGCTCCTCAGATCACCACCCCT
GTCAAAATCACACTGACGGAAATAGAACCTTCTGTTGAAACCACTACCCAAGAGAAGACCCCTGAGAAGC
AAGATATATGTCTAAAGCCAAGTCCTGACACAGTCCCCACTGTCACTGTCTCGGAGCCTGAAGACGACAG
CCCAGGATCTATCACCCCTCCATCTTCTGGAACAGAACCATCTGCTGCAGAATCCCAGGGGAAAGGCAGC
ATCTCCGAGGATGAGCTGATCACCGCCATCAAAGAAGCAAAGGGATTATCGTATGAAACCGCCGAGAACC
CACGGCCGGTGGGCCAGCTGGCCGACAGGCCCGAGGTCAAGGCCAGGTCCGGACCGCCAACCATCCCCAG
CCCCCTGGACCACGAGGCCAGCAGCGCGGAGTCGGGGGACTCAGAGATCGAGCTGGTGTCCGAGGACCCC
ATGGCCGCGGAGGACGCGCTGCCCTCAGGCTATGTGAGCTTTGGCCACGTGGGCGGCCCGCCGCCCTCGC
CCGCCTCGCCATCCATCCAGTACAGCATCCTGAGGGAGGAGCGCGAGGCCGAGCTGGACAGCGAGCTCAT
CATCGAGTCGTGCGACGCCTCCTCGGCCTCGGAGGAGAGCCCCAAGCGGGAGCAGGACTCACCCCCGATG
AAGCCCAGCGCCCTGGATGCCATCCGGGAGGAGACTGGCGTCCGGGCCGAGGAGCGTGCGCCAAGCCGGC
GGGGCCTGGCCGAGCCGGGTTCCTTCCTCGACTACCCCTCAACTGAGCCCCAGCCTGGCCCCGAGCTGCC
CCCTGGAGACGGAGCCCTGGAGCCTGAGACGCCCATGTTGCCACGGAAGCCTGAAGAAGACTCGAGTTCC
AACCAAAGTCCTGCGGCCACAAAGGGCCCTGGGCCTCTAGGTCCTGGCGCCCCGCCCCCACTGCTGTTTC
TCAATAAGCAAAAAGCTATTGACCTGTTGTATTGGCGGGACATCAAGCAGACGGGCATCGTGTTTGGGAG
TTTCCTGCTGCTGCTCTTCTCCCTGACCCAGTTCAGCGTGGTGAGCGTCGTGGCCTACCTGGCCCTGGCC
GCACTCTCAGCCACCATCAGTTTCCGCATCTACAAGTCTGTTTTACAAGCAGTGCAGAAAACCGACGAAG
GCCACCCTTTCAAGGCCTACTTGGAGCTTGAGATCACCCTTTCTCAGGAGCAGATTCAGAAGTACACGGA
CTGCCTGCAGTTCTACGTGAACAGCACACTTAAGGAACTGAGGAGGCTCTTCCTTGTCCAGGACCTGGTG
GATTCCTTAAAATTTGCAGTCCTGATGTGGCTCCTGACCTACGTTGGCGCTCTCTTCAATGGCCTGACCC
TGCTGCTCATGGCTGTGGTTTCAATGTTTACTCTACCTGTAGTGTATGTTAAGCACCAGGCACAGATTGA
CCAATATCTGGGACTTGTGAGGACTCACATAAATGCTGTTGTGGCAAAGATTCAGGCTAAAATCCCAGGC
GCTAAGAGGCATGCTGAGTAA

Translation (776 aa):
MAAPGDPQDELLPLAGPGSQWLRHRGEGENEAVTPKGATPAPQAGEPSPGLGARAREAASREAGSGPARQ
SPVAMETASTGVAGVSSAMDHTFSTTSKDGEGSCYTSLISDICYPPQEDSTYFTGILQKENGHVTISESP
EELGTPGPSLPDVPGIESRGLFSSDSGIEMTPAESTEVNKILADPLDQMKAEAYKYIDITRPEEVKHQEQ
HHPELEDKDLDFKNKDTDISIKPEGVREPDKPAPVEGKIIKDHLLEESTFAPYIDDLSEEQRRAPQITTP
VKITLTEIEPSVETTTQEKTPEKQDICLKPSPDTVPTVTVSEPEDDSPGSITPPSSGTEPSAAESQGKGS
ISEDELITAIKEAKGLSYETAENPRPVGQLADRPEVKARSGPPTIPSPLDHEASSAESGDSEIELVSEDP
MAAEDALPSGYVSFGHVGGPPPSPASPSIQYSILREEREAELDSELIIESCDASSASEESPKREQDSPPM
KPSALDAIREETGVRAEERAPSRRGLAEPGSFLDYPSTEPQPGPELPPGDGALEPETPMLPRKPEEDSSS
NQSPAATKGPGPLGPGAPPPLLFLNKQKAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALA
ALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLV
DSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG
AKRHAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH