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Report for CCDS9505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9505.1 Public Homo sapiens 13 BIVM 24 110 108 CCDS HistoryNCBI Gene:54841Re-query CCDS DB by CCDS ID:9505.1Re-query CCDS DB by GeneID:54841See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9505.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257336.6 ENSP00000257336.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257336.6Link to Ensembl Protein Viewer:ENSP00000257336.1Re-query CCDS DB by Nucleotide ID:ENST00000257336Re-query CCDS DB by Protein ID:ENSP00000257336
Original member Current member EBI ENST00000652084.1 ENSP00000498544.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652084.1Link to Ensembl Protein Viewer:ENSP00000498544.1Re-query CCDS DB by Nucleotide ID:ENST00000652084Re-query CCDS DB by Protein ID:ENSP00000498544
Original member Current member NCBI NM_017693.4 NP_060163.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017693.4Link to Protein Sequence:NP_060163.2Re-query CCDS DB by Nucleotide ID:NM_017693Re-query CCDS DB by Protein ID:NP_060163Link to BLAST:NP_060163.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060163.2 503 Q86UB2-1 503 100% 0 0

Chromosomal Locations for CCDS 9505.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 102807268 102807745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102816428 102816554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102821037 102821132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102821743 102821847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102822065 102822159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102831565 102831697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102834466 102834552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102838643 102838739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102839572 102839865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGCCTAACGTTGCAGAAACAGAAAGGTCAAATGATTCTGGAAATGGTGAGCACAAATCTGAGAGAAAGT
CA
CCTGAAGAGAATCTACAAGGTGCTGTAAAATCTTTCTGCACAAGTGCCTCAGGAGCACCCTTGGGTCC
C
AAAGGAGATGGTCATTATCCATGGAGTTGTCCAGTGACTCATACACGGGAAAAAATTTATGCCATCTGT
TCG
GACTATGCCTTTCTCAACCAGGCGACCTCAATCTATAAAACTCCAAATCCATCCCGCTCTCCTTGCC
TC
CCTGATAGTACCTCTTTATCTGCTGGAAATAATTCATCAAGATACATTGGTATCCCGACTAGTACATC
G
GAAATTATCTACAATGAAGAAAATAGCTTGGAAAACTTATCCAACAGCCTGGGCAAGCTACCTCTCGCA
TGG
GAAATTGATAAATCTGAATTTGATGGGGTGACCACAAATTCGAAACACAAATCAGGCAATGCAAAGA
AA
CAAGTTTCCAAGAGAAAAACTTCAGATAAAAAGGGAAGATATCAGAAGGAATGTCCTCAGCATTCTCC
T
CTTGAAGATATTAAACAGCGGAAAGTATTAGACCTCAGACGATGGTACTGCATAAGCCGACCACAGTAT
AAG
ACTTCTTGTGGCATCTCTTCATTAATTTCTTGTTGGAATTTCTTATACAGCACAATGGGAGCTGGAA
A
C
CTTCCACCTATTACCCAAGAAGAAGCTTTACATATTCTGGGCTTTCAACCTCCATTTGAAGATATTAG
G
TTTGGTCCTTTCACGGGGAATACAACACTTATGAGGTGGTTTAGACAAATTAATGACCACTTCCATGTA
AAA
GGATGCTCTTATGTTCTATATAAGCCTCATGGGAAGAATAAAACAGCAGGAGAAACTGCTTCAGGGG
CC
CTGTCAAAGTTAACCCGTGGATTGAAAGATGAATCGCTGGCTTATATCTATCATTGCCAAAATCATTA
T
TTTTGTCCAATTGGCTTCGAAGCAACCCCTGTTAAAGCTAATAAAGCATTCAGCAGGGGACCTCTCTCA
CCA
CAGGAAGTTGAATATTGGATCTTAATTGGAGAATCAAGTAGAAAACATCCTGCCATTCACTGTAAAA
A
A
TGGGCAGATATTGTTACTGATCTAAACACTCAAAATCCAGAATACCTGGATATCCGGCACTTAGAGAG
G
GGACTGCAGTATAGAAAAACAAAGAAGGTTGGGGGAAATTTGCATTGCATCATAGCATTCCAGAGACTT
AAC
TGGCAAAGATTTGGCCTTTGGAACTTTCCATTTGGAACCATTAGACAAGAATCACAACCTCCAACAC
AT
GCCCAGGGAATTGCCAAATCTGAGAGTGAAGACAATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCG
G
TCTTTCAGTGCTAGTTTCCATCAGGACTCGGCATGGAAAAAGATGTCTAGTATCCATGAGAGAAGGAAC
AGT
GGTTACCAGGGTTACAGTGATTACGATGGGAATGATTGA


Translation (503 aa):
MPNVAETERSNDSGNGEHKSERKSPEENLQGAVKSFCTSASGAPLGPKGDGHYPWSCPVTHTREKIYAIC
S
DYAFLNQATSIYKTPNPSRSPCLPDSTSLSAGNNSSRYIGIPTSTSEIIYNEENSLENLSNSLGKLPLA
W
EIDKSEFDGVTTNSKHKS
GNAKKQVSKRKTSDKKGRYQKECPQHSPLEDIKQRKVLDLRRWYCISRPQY
K
TSCGISSLISCWNFLYSTMGAG
NLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHV
K
GCSYVLYKPHGKNKTAGET
ASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPLS
P
QEVEYWILIGESSRKHPAIHCK
KWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKVGGNLHCIIAFQRL
N
WQRFGLWNFPFGTIRQESQPPTHAQGIAKSESEDNISKKQHGRLGRSFSASFHQDSAWKKMSSIHERRN
S
GYQGYSDYDGND




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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