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Report for CCDS9386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9386.1 Public Homo sapiens 13 FAM216B 24 110 108 CCDS HistoryNCBI Gene:144809Re-query CCDS DB by CCDS ID:9386.1Re-query CCDS DB by GeneID:144809See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9386.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313851.3 ENSP00000319336.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313851.3Link to Ensembl Protein Viewer:ENSP00000319336.1Re-query CCDS DB by Nucleotide ID:ENST00000313851Re-query CCDS DB by Protein ID:ENSP00000319336
Original member Current member EBI ENST00000537894.5 ENSP00000445786.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537894.5Link to Ensembl Protein Viewer:ENSP00000445786.1Re-query CCDS DB by Nucleotide ID:ENST00000537894Re-query CCDS DB by Protein ID:ENSP00000445786
Original member Current member NCBI NM_001318932.2 NP_001305861.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318932.2Link to Protein Sequence:NP_001305861.1Re-query CCDS DB by Nucleotide ID:NM_001318932Re-query CCDS DB by Protein ID:NP_001305861Link to BLAST:NP_001305861.1
Original member Current member NCBI NM_182508.3 NP_872314.1 Accepted alive Link to Nucleotide Sequence:NM_182508.3Link to Protein Sequence:NP_872314.1Re-query CCDS DB by Nucleotide ID:NM_182508Re-query CCDS DB by Protein ID:NP_872314Link to BLAST:NP_872314.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305861.1 139 Q8N7L0 139 100% 0 0
NP_872314.1 139 Q8N7L0 139 100% 0 0

Chromosomal Locations for CCDS 9386.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 42784068 42784166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 42786763 42786883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 42788591 42788790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGGACAAAACTGGAAAAGACAACAAAAGCTTTGGAATGTTCCACAACTTCCTTTTATTCGAGTTCCTC
CCTCCATCTATGACACTTCCTTACTAAAGGCCCTCAACCAAGGGCAACAGCGCTACTTTTACAGCATTAT
GAGGATTTACAACTCCAGGCCCCAGTGGGAGGCCCTGCAGACCCGCTACATTCACAGCCTTCAGCACCAA
CAGCTGCTTGGCTATATTACTCAACGGGAAGCCTTGTCTTATGCTCTTGTACTTAGAGATTCAACCAAGA
GAGCCTCAGCCAAGGTAGCTCCTCAAAGAACCATTCCCCGGAAAACTTCAGCCATGACAAGAAGATGTCC
ATCAGTACTACCTGTATCTGTGGTTCTACCTAGGGCCCAAAGTAAAAGGCGCCAAGTGCTCAGGAACTGA

Translation (139 aa):
MGQNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYNSRPQWEALQTRYIHSLQHQ
QLLGYITQREALSYALVLRDSTKRASAKVAPQRTIPRKTSAMTRRCPSVLPVSVVLPRAQSKRRQVLRN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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