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Report for CCDS9162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9162.1 Public Homo sapiens 12 RPL6 24 110 108 CCDS HistoryNCBI Gene:6128Re-query CCDS DB by CCDS ID:9162.1Re-query CCDS DB by GeneID:6128See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9162.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000202773.14 ENSP00000202773.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000202773.14Link to Ensembl Protein Viewer:ENSP00000202773.9Re-query CCDS DB by Nucleotide ID:ENST00000202773Re-query CCDS DB by Protein ID:ENSP00000202773
Original member Current member EBI ENST00000424576.6 ENSP00000403172.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424576.6Link to Ensembl Protein Viewer:ENSP00000403172.2Re-query CCDS DB by Nucleotide ID:ENST00000424576Re-query CCDS DB by Protein ID:ENSP00000403172
Original member Current member NCBI NM_000970.6 NP_000961.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000970.6Link to Protein Sequence:NP_000961.2Re-query CCDS DB by Nucleotide ID:NM_000970Re-query CCDS DB by Protein ID:NP_000961Link to BLAST:NP_000961.2
Original member Current member NCBI NM_001024662.3 NP_001019833.1 Accepted alive Link to Nucleotide Sequence:NM_001024662.3Link to Protein Sequence:NP_001019833.1Re-query CCDS DB by Nucleotide ID:NM_001024662Re-query CCDS DB by Protein ID:NP_001019833Link to BLAST:NP_001019833.1
Original member Current member NCBI NM_001320137.2 NP_001307066.1 Accepted alive Link to Nucleotide Sequence:NM_001320137.2Link to Protein Sequence:NP_001307066.1Re-query CCDS DB by Nucleotide ID:NM_001320137Re-query CCDS DB by Protein ID:NP_001307066Link to BLAST:NP_001307066.1
Original member Current member NCBI NM_001320138.2 NP_001307067.1 Accepted alive Link to Nucleotide Sequence:NM_001320138.2Link to Protein Sequence:NP_001307067.1Re-query CCDS DB by Nucleotide ID:NM_001320138Re-query CCDS DB by Protein ID:NP_001307067Link to BLAST:NP_001307067.1
Original member Current member NCBI NM_001320139.2 NP_001307068.1 Accepted alive Link to Nucleotide Sequence:NM_001320139.2Link to Protein Sequence:NP_001307068.1Re-query CCDS DB by Nucleotide ID:NM_001320139Re-query CCDS DB by Protein ID:NP_001307068Link to BLAST:NP_001307068.1
Original member Current member NCBI NM_001320140.2 NP_001307069.1 Accepted alive Link to Nucleotide Sequence:NM_001320140.2Link to Protein Sequence:NP_001307069.1Re-query CCDS DB by Nucleotide ID:NM_001320140Re-query CCDS DB by Protein ID:NP_001307069Link to BLAST:NP_001307069.1
Original member Current member NCBI NM_001320141.2 NP_001307070.1 Accepted alive Link to Nucleotide Sequence:NM_001320141.2Link to Protein Sequence:NP_001307070.1Re-query CCDS DB by Nucleotide ID:NM_001320141Re-query CCDS DB by Protein ID:NP_001307070Link to BLAST:NP_001307070.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000961.2 288 Q02878 288 100% 0 0
NP_001019833.1 288 Q02878 288 100% 0 0
NP_001307066.1 288 Q02878 288 100% 0 0
NP_001307067.1 288 Q02878 288 100% 0 0
NP_001307068.1 288 Q02878 288 100% 0 0
NP_001307069.1 288 Q02878 288 100% 0 0
NP_001307070.1 288 Q02878 288 100% 0 0

Chromosomal Locations for CCDS 9162.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112405224 112405376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112405853 112406037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112406294 112406342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112406747 112406890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112408240 112408338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112408420 112408656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCGGGTGAAAAAGTTGAGAAGCCAGATACTAAAGAGAAGAAACCCGAAGCCAAGAAGGTTGATGCTG
GTGGCAAGGTGAAAAAGGGTAACCTCAAAGCTAAAAAGCCCAAGAAGGGGAAGCCCCATTGCAGCCGCAA
CCCTGTCCTTGTCAGAGGAATTGGCAGGTATTCCCGATCTGCCATGTATTCCAGAAAGGCCATGTACAAG
AGGAAGTACTCAGCCGCTAAATCCAAGGTTGAAAAGAAAAAGAAGGAGAAGGTTCTCGCAACTGTTACAA
AACCAGTTGGTGGTGACAAGAACGGCGGTACCCGGGTGGTTAAACTTCGCAAAATGCCTAGATATTATCC
TACTGAAGATGTGCCTCGAAAGCTGTTGAGCCACGGCAAAAAACCCTTCAGTCAGCACGTGAGAAAACTG
CGAGCCAGCATTACCCCCGGGACCATTCTGATCATCCTCACTGGACGCCACAGGGGCAAGAGGGTGGTTT
TCCTGAAGCAGCTGGCTAGTGGCTTATTACTTGTGACTGGACCTCTGGTCCTCAATCGAGTTCCTCTACG
AAGAACACACCAGAAATTTGTCATTGCCACTTCAACCAAAATCGATATCAGCAATGTAAAAATCCCAAAA
CATCTTACTGATGCTTACTTCAAGAAGAAGAAGCTGCGGAAGCCCAGACACCAGGAAGGTGAGATCTTCG
ACACAGAAAAAGAGAAATATGAGATTACGGAGCAGCGCAAGATTGATCAGAAAGCTGTGGACTCACAAAT
TTTACCAAAAATCAAAGCTATTCCTCAGCTCCAGGGCTACCTGCGATCTGTGTTTGCTCTGACGAATGGA
ATTTATCCTCACAAATTGGTGTTCTAA

Translation (288 aa):
MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYK
RKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKL
RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPK
HLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNG
IYPHKLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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